Hb_001221_030

Information

Type -
Description -
Location Contig1221: 10521-14219
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09720g
description POPTRDRAFT_823409; hypothetical protein
nr
ID XP_012079870.1
description PREDICTED: adenylate kinase 4 [Jatropha curcas]
swissprot
ID Q08480
description Adenylate kinase 4 OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1
trembl
ID A0A067KGH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11320 PE=3 SV=1
Gene Ontology
ID GO:0005737
description adenylate kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06697: 10522-14164 , PASA_asmbl_06699: 15027-18796
cDNA
(Sanger)
(ID:Location)		 046_O03.ab1: 10777-14136

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_030 0.0 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
2 Hb_000684_030 0.0659153447 - - syntaxin, putative [Ricinus communis]
3 Hb_000174_260 0.074679828 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
4 Hb_005276_040 0.0945761906 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
5 Hb_003605_020 0.0973809657 - - exocyst complex component sec6, putative [Ricinus communis]
6 Hb_000200_300 0.0981868588 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
7 Hb_000330_090 0.1058874098 - - ornithine carbamoyltransferase, putative [Ricinus communis]
8 Hb_003266_030 0.1066949709 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
9 Hb_004994_210 0.1076053248 - - phosphomannomutase family protein [Populus trichocarpa]
10 Hb_005754_040 0.108032826 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
11 Hb_001946_390 0.1086835206 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
12 Hb_008147_090 0.1090034783 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002392_010 0.110278498 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
14 Hb_001898_050 0.110579052 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
15 Hb_000057_110 0.11069968 - - PREDICTED: kinesin-13A [Jatropha curcas]
16 Hb_000181_350 0.111571102 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
17 Hb_007904_230 0.1117271846 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
18 Hb_001369_790 0.1122455784 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
19 Hb_015057_020 0.1125624295 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
20 Hb_002193_060 0.116381346 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001221_030 Hb_001221_030 Hb_000684_030 Hb_000684_030 Hb_001221_030--Hb_000684_030 Hb_000174_260 Hb_000174_260 Hb_001221_030--Hb_000174_260 Hb_005276_040 Hb_005276_040 Hb_001221_030--Hb_005276_040 Hb_003605_020 Hb_003605_020 Hb_001221_030--Hb_003605_020 Hb_000200_300 Hb_000200_300 Hb_001221_030--Hb_000200_300 Hb_000330_090 Hb_000330_090 Hb_001221_030--Hb_000330_090 Hb_000057_110 Hb_000057_110 Hb_000684_030--Hb_000057_110 Hb_000684_030--Hb_000174_260 Hb_003266_030 Hb_003266_030 Hb_000684_030--Hb_003266_030 Hb_000684_030--Hb_000200_300 Hb_000684_030--Hb_003605_020 Hb_000174_260--Hb_005276_040 Hb_000174_260--Hb_003605_020 Hb_000174_260--Hb_000330_090 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_065968_010 Hb_065968_010 Hb_003605_020--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_003605_020--Hb_000395_280 Hb_001957_010 Hb_001957_010 Hb_003605_020--Hb_001957_010 Hb_003605_020--Hb_001269_130 Hb_019654_020 Hb_019654_020 Hb_003605_020--Hb_019654_020 Hb_000926_080 Hb_000926_080 Hb_000200_300--Hb_000926_080 Hb_000200_300--Hb_000057_110 Hb_000200_300--Hb_003266_030 Hb_004965_110 Hb_004965_110 Hb_000200_300--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_000200_300--Hb_000086_080 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34369 3.81791 27.6804 27.0083 4.87169 6.64084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0447 18.7352 11.5476 17.6041 17.82

CAGE analysis