Hb_007199_020

Information

Type -
Description -
Location Contig7199: 28478-40473
Sequence    

Annotation

kegg
ID cic:CICLE_v10028570mg
description hypothetical protein
nr
ID XP_006424836.1
description hypothetical protein CICLE_v10028570mg [Citrus clementina]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID V4SC26
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028570mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55565: 29628-29798 , PASA_asmbl_55566: 29010-29742 , PASA_asmbl_55567: 39312-41249 , PASA_asmbl_55568: 39669-40563
cDNA
(Sanger)
(ID:Location)		 016_O19.ab1: 40160-41249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007199_020 0.0 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
2 Hb_000330_090 0.0870102999 - - ornithine carbamoyltransferase, putative [Ricinus communis]
3 Hb_001804_090 0.093638053 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
4 Hb_001623_500 0.0981778159 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
5 Hb_005214_170 0.1045502813 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
6 Hb_007904_230 0.1063269878 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
7 Hb_000174_260 0.1067593423 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
8 Hb_002759_190 0.1084769308 - - PREDICTED: protein NLRC3 [Jatropha curcas]
9 Hb_001898_050 0.1097666389 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
10 Hb_004440_060 0.1114520368 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_000364_050 0.1115978941 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
12 Hb_003747_230 0.1128027098 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
13 Hb_049575_010 0.1145100723 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
14 Hb_001900_140 0.115634857 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
15 Hb_000926_080 0.1159172844 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
16 Hb_003266_030 0.1172688855 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
17 Hb_000189_570 0.1186658475 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
18 Hb_001102_050 0.1198921393 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
19 Hb_004123_020 0.1219236096 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_001863_120 0.1222482984 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007199_020 Hb_007199_020 Hb_000330_090 Hb_000330_090 Hb_007199_020--Hb_000330_090 Hb_001804_090 Hb_001804_090 Hb_007199_020--Hb_001804_090 Hb_001623_500 Hb_001623_500 Hb_007199_020--Hb_001623_500 Hb_005214_170 Hb_005214_170 Hb_007199_020--Hb_005214_170 Hb_007904_230 Hb_007904_230 Hb_007199_020--Hb_007904_230 Hb_000174_260 Hb_000174_260 Hb_007199_020--Hb_000174_260 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_000330_090--Hb_007904_230 Hb_001804_090--Hb_000330_090 Hb_146255_020 Hb_146255_020 Hb_001804_090--Hb_146255_020 Hb_001105_170 Hb_001105_170 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190 Hb_004339_040 Hb_004339_040 Hb_001623_500--Hb_004339_040 Hb_001832_200 Hb_001832_200 Hb_001623_500--Hb_001832_200 Hb_187247_020 Hb_187247_020 Hb_001623_500--Hb_187247_020 Hb_017193_010 Hb_017193_010 Hb_001623_500--Hb_017193_010 Hb_000579_080 Hb_000579_080 Hb_001623_500--Hb_000579_080 Hb_005214_170--Hb_000330_090 Hb_005946_150 Hb_005946_150 Hb_005214_170--Hb_005946_150 Hb_000193_260 Hb_000193_260 Hb_005214_170--Hb_000193_260 Hb_000331_420 Hb_000331_420 Hb_005214_170--Hb_000331_420 Hb_005214_170--Hb_001804_090 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_007904_230--Hb_049575_010 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_000174_260--Hb_001269_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.7904 0.590457 3.7782 1.39506 0.530002 0.71419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32848 2.14858 1.20866 2.05003 2.48941

CAGE analysis