Hb_005214_170

Information

Type -
Description -
Location Contig5214: 131369-138348
Sequence    

Annotation

kegg
ID tcc:TCM_007315
description Magnesium transporter CorA-like family protein isoform 1
nr
ID XP_012074576.1
description PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
swissprot
ID A1JNE0
description Zinc transport protein ZntB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN=zntB PE=3 SV=1
trembl
ID A0A067KI92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09923 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter -like family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46798: 131765-133091 , PASA_asmbl_46800: 137822-138403 , PASA_asmbl_46801: 137822-138493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_170 0.0 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
2 Hb_000330_090 0.1025930087 - - ornithine carbamoyltransferase, putative [Ricinus communis]
3 Hb_007199_020 0.1045502813 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
4 Hb_005946_150 0.107329329 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
5 Hb_000193_260 0.116573093 - - PREDICTED: protein NEN1 [Jatropha curcas]
6 Hb_000331_420 0.1174907973 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
7 Hb_001804_090 0.1185776036 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
8 Hb_000009_520 0.1186524451 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
9 Hb_000398_170 0.1186960513 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
10 Hb_001623_500 0.1262748457 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
11 Hb_000174_260 0.1305057045 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
12 Hb_002534_130 0.1317262486 - - membrane associated ring finger 1,8, putative [Ricinus communis]
13 Hb_000076_210 0.1319953201 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
14 Hb_000742_010 0.133839818 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_172979_010 0.1339826667 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
16 Hb_049575_010 0.1343421484 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_001147_050 0.1344483094 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
18 Hb_000122_190 0.135470033 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
19 Hb_027506_040 0.1355566534 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_000350_050 0.1368251237 - - hypothetical protein JCGZ_07831 [Jatropha curcas]

Gene co-expression network

sample Hb_005214_170 Hb_005214_170 Hb_000330_090 Hb_000330_090 Hb_005214_170--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_005214_170--Hb_007199_020 Hb_005946_150 Hb_005946_150 Hb_005214_170--Hb_005946_150 Hb_000193_260 Hb_000193_260 Hb_005214_170--Hb_000193_260 Hb_000331_420 Hb_000331_420 Hb_005214_170--Hb_000331_420 Hb_001804_090 Hb_001804_090 Hb_005214_170--Hb_001804_090 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_000330_090--Hb_007199_020 Hb_007199_020--Hb_001804_090 Hb_001623_500 Hb_001623_500 Hb_007199_020--Hb_001623_500 Hb_007199_020--Hb_007904_230 Hb_007199_020--Hb_000174_260 Hb_005946_150--Hb_001269_130 Hb_008304_020 Hb_008304_020 Hb_005946_150--Hb_008304_020 Hb_006824_010 Hb_006824_010 Hb_005946_150--Hb_006824_010 Hb_002006_150 Hb_002006_150 Hb_005946_150--Hb_002006_150 Hb_005946_150--Hb_000330_090 Hb_001277_030 Hb_001277_030 Hb_005946_150--Hb_001277_030 Hb_002534_130 Hb_002534_130 Hb_000193_260--Hb_002534_130 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_026198_010 Hb_026198_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_000331_570 Hb_000331_570 Hb_000331_420--Hb_000331_570 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_002871_040 Hb_002871_040 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_001804_090--Hb_000330_090 Hb_146255_020 Hb_146255_020 Hb_001804_090--Hb_146255_020 Hb_001105_170 Hb_001105_170 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70077 2.92586 10.4343 3.54423 0.671574 2.20396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66156 3.80444 3.40867 5.53898 4.927

CAGE analysis