Hb_001804_090

Information

Type -
Description -
Location Contig1804: 167425-173610
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009527mg
description hypothetical protein
nr
ID XP_012087993.1
description PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
swissprot
ID P93394
description Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1
trembl
ID A0A067JX20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25114 PE=4 SV=1
Gene Ontology
ID GO:0004845
description uracil phosphoribosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17460: 167376-173600 , PASA_asmbl_17461: 167084-173600
cDNA
(Sanger)
(ID:Location)		 003_C23.ab1: 167446-173112 , 014_K04.ab1: 167382-170569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001804_090 0.0 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
2 Hb_000330_090 0.0880087652 - - ornithine carbamoyltransferase, putative [Ricinus communis]
3 Hb_146255_020 0.0927210296 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
4 Hb_007199_020 0.093638053 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
5 Hb_001105_170 0.1005348399 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
6 Hb_001178_010 0.1007978436 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
7 Hb_002759_190 0.1020079106 - - PREDICTED: protein NLRC3 [Jatropha curcas]
8 Hb_006061_040 0.1023591918 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
9 Hb_004994_210 0.1029098142 - - phosphomannomutase family protein [Populus trichocarpa]
10 Hb_001863_380 0.1046804705 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
11 Hb_014497_100 0.1053657028 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
12 Hb_000413_240 0.1057581863 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_000926_080 0.1073832067 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
14 Hb_000189_570 0.1075433409 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
15 Hb_000926_200 0.1079362111 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
16 Hb_004984_030 0.1088027355 - - protein with unknown function [Ricinus communis]
17 Hb_000163_100 0.1093404793 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
18 Hb_001102_050 0.1105569446 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
19 Hb_000832_190 0.1109380501 - - Rab3 [Hevea brasiliensis]
20 Hb_001633_090 0.111312618 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001804_090 Hb_001804_090 Hb_000330_090 Hb_000330_090 Hb_001804_090--Hb_000330_090 Hb_146255_020 Hb_146255_020 Hb_001804_090--Hb_146255_020 Hb_007199_020 Hb_007199_020 Hb_001804_090--Hb_007199_020 Hb_001105_170 Hb_001105_170 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_000330_090--Hb_007199_020 Hb_006061_040 Hb_006061_040 Hb_146255_020--Hb_006061_040 Hb_004807_020 Hb_004807_020 Hb_146255_020--Hb_004807_020 Hb_002343_040 Hb_002343_040 Hb_146255_020--Hb_002343_040 Hb_001025_090 Hb_001025_090 Hb_146255_020--Hb_001025_090 Hb_146255_020--Hb_001105_170 Hb_001623_500 Hb_001623_500 Hb_007199_020--Hb_001623_500 Hb_005214_170 Hb_005214_170 Hb_007199_020--Hb_005214_170 Hb_007199_020--Hb_007904_230 Hb_007199_020--Hb_000174_260 Hb_003848_040 Hb_003848_040 Hb_001105_170--Hb_003848_040 Hb_012340_090 Hb_012340_090 Hb_001105_170--Hb_012340_090 Hb_001105_170--Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_001105_170--Hb_001863_380 Hb_012565_070 Hb_012565_070 Hb_001105_170--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_001105_170--Hb_000300_260 Hb_014497_100 Hb_014497_100 Hb_001178_010--Hb_014497_100 Hb_000537_100 Hb_000537_100 Hb_001178_010--Hb_000537_100 Hb_002316_140 Hb_002316_140 Hb_001178_010--Hb_002316_140 Hb_004129_090 Hb_004129_090 Hb_001178_010--Hb_004129_090 Hb_001900_140 Hb_001900_140 Hb_001178_010--Hb_001900_140 Hb_000926_200 Hb_000926_200 Hb_001178_010--Hb_000926_200 Hb_003747_230 Hb_003747_230 Hb_002759_190--Hb_003747_230 Hb_000012_250 Hb_000012_250 Hb_002759_190--Hb_000012_250 Hb_002759_190--Hb_001863_380 Hb_005494_010 Hb_005494_010 Hb_002759_190--Hb_005494_010 Hb_000227_170 Hb_000227_170 Hb_002759_190--Hb_000227_170 Hb_002759_190--Hb_001900_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84072 6.59417 31.9051 13.8461 5.38899 5.18767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8022 17.5626 9.153 11.8105 12.6117

CAGE analysis