Hb_007904_230

Information

Type -
Description -
Location Contig7904: 130938-135822
Sequence    

Annotation

kegg
ID rcu:RCOM_1083190
description trytophan synthase alpha subunit, putative
nr
ID XP_012085546.1
description PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
swissprot
ID A1L4V7
description D-cysteine desulfhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g26115 PE=2 SV=1
trembl
ID A0A067K4L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17867 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58341: 134752-135004 , PASA_asmbl_58342: 135006-135899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_230 0.0 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
2 Hb_000364_050 0.0586456748 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
3 Hb_003266_030 0.0589284386 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
4 Hb_000811_070 0.0694350047 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
5 Hb_007192_030 0.0710988759 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
6 Hb_000080_130 0.0737165156 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
7 Hb_049575_010 0.0738716055 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
8 Hb_073973_090 0.0762517987 - - Aminotransferase ybdL, putative [Ricinus communis]
9 Hb_004965_110 0.0763908392 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
10 Hb_001900_140 0.0766759241 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
11 Hb_000189_570 0.0769583789 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
12 Hb_062226_060 0.0770817661 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
13 Hb_011671_260 0.0812807225 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
14 Hb_000317_260 0.0825371786 - - unknown [Populus trichocarpa]
15 Hb_000330_090 0.0836298895 - - ornithine carbamoyltransferase, putative [Ricinus communis]
16 Hb_005167_010 0.0839036119 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
17 Hb_000086_080 0.085598146 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007741_110 0.0857677243 - - -
19 Hb_000107_430 0.0864035396 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
20 Hb_001369_790 0.0873336671 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007904_230 Hb_007904_230 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010 Hb_001369_790 Hb_001369_790 Hb_007192_030--Hb_001369_790 Hb_007192_030--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_007192_030--Hb_000622_290 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_004545_110 Hb_004545_110 Hb_000080_130--Hb_004545_110 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_000080_130--Hb_005167_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_073973_090 Hb_073973_090 Hb_049575_010--Hb_073973_090 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_049575_010--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60876 1.90943 5.76446 4.35367 1.62512 1.54822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80739 4.61581 3.26263 3.19991 5.55307

CAGE analysis