Hb_073973_090

Information

Type -
Description -
Location Contig73973: 63259-70432
Sequence    

Annotation

kegg
ID rcu:RCOM_1031640
description Aminotransferase ybdL, putative (EC:2.6.1.1)
nr
ID XP_002513782.1
description Aminotransferase ybdL, putative [Ricinus communis]
swissprot
ID P77806
description Methionine aminotransferase OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1
trembl
ID B9RJ63
description Aminotransferase ybdL, putative OS=Ricinus communis GN=RCOM_1031640 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pyridoxal phosphate-dependent transferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56327: 62288-62488 , PASA_asmbl_56328: 63373-70373 , PASA_asmbl_56329: 66564-66963
cDNA
(Sanger)
(ID:Location)		 028_N23.ab1: 63373-69430 , 038_L10.ab1: 63373-69473

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_090 0.0 - - Aminotransferase ybdL, putative [Ricinus communis]
2 Hb_000035_090 0.0579488889 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
3 Hb_000023_360 0.0623847873 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
4 Hb_002631_240 0.063867513 - - JHL17M24.3 [Jatropha curcas]
5 Hb_011671_260 0.0645107309 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
6 Hb_049575_010 0.0659240126 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
7 Hb_000537_100 0.0688502064 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_006907_060 0.071183768 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
9 Hb_003053_110 0.0712107494 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_000086_080 0.0714341963 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007904_230 0.0762517987 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
12 Hb_000061_180 0.0763506664 - - exonuclease, putative [Ricinus communis]
13 Hb_010863_050 0.0777626475 - - OTU domain-containing protein 6B, putative [Ricinus communis]
14 Hb_000128_060 0.0788918707 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
15 Hb_005511_140 0.0794449227 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
16 Hb_001882_010 0.0798744412 - - -
17 Hb_003098_070 0.0803635851 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
18 Hb_157023_020 0.0807201981 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_007741_110 0.0811209392 - - -
20 Hb_003266_030 0.0813337615 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]

Gene co-expression network

sample Hb_073973_090 Hb_073973_090 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_000375_390 Hb_000375_390 Hb_000035_090--Hb_000375_390 Hb_002876_300 Hb_002876_300 Hb_000035_090--Hb_002876_300 Hb_002435_100 Hb_002435_100 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_002631_240--Hb_011671_260 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040 Hb_003266_030 Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_007904_230 Hb_007904_230 Hb_049575_010--Hb_007904_230 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_000537_100--Hb_005946_040 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4681 37.0478 71.2425 56.2016 24.4566 24.0983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8214 48.968 30.1668 32.4018 74.6777

CAGE analysis