Hb_001675_140

Information

Type -
Description -
Location Contig1675: 94077-97875
Sequence    

Annotation

kegg
ID rcu:RCOM_1493520
description Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative
nr
ID XP_010098083.1
description hypothetical protein L484_026216 [Morus notabilis]
swissprot
ID Q9M812
description Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana GN=CURT1C PE=1 SV=1
trembl
ID W9RGW1
description Uncharacterized protein OS=Morus notabilis GN=L484_026216 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein curvature thylakoid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15519: 95246-97955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_140 0.0 - - hypothetical protein L484_026216 [Morus notabilis]
2 Hb_000023_360 0.0785322591 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
3 Hb_000270_480 0.0794263109 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
4 Hb_011671_260 0.0818283846 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
5 Hb_000086_080 0.0842616682 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000128_060 0.0921646293 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
7 Hb_073973_090 0.101378225 - - Aminotransferase ybdL, putative [Ricinus communis]
8 Hb_048093_010 0.1017909292 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
9 Hb_006907_060 0.1020161915 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
10 Hb_000397_150 0.1028160817 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
11 Hb_001160_100 0.1034771742 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
12 Hb_005511_140 0.1035153106 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_002053_010 0.1041067309 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
14 Hb_000088_260 0.1060394052 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
15 Hb_003462_180 0.1066309904 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
16 Hb_042083_040 0.108980293 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000291_180 0.109146521 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
18 Hb_003266_030 0.1106314812 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
19 Hb_000941_100 0.1107158454 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
20 Hb_004242_110 0.1127925458 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_140 Hb_001675_140 Hb_000023_360 Hb_000023_360 Hb_001675_140--Hb_000023_360 Hb_000270_480 Hb_000270_480 Hb_001675_140--Hb_000270_480 Hb_011671_260 Hb_011671_260 Hb_001675_140--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001675_140--Hb_000086_080 Hb_000128_060 Hb_000128_060 Hb_001675_140--Hb_000128_060 Hb_073973_090 Hb_073973_090 Hb_001675_140--Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000023_360--Hb_000086_080 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_000088_260 Hb_000088_260 Hb_000270_480--Hb_000088_260 Hb_000270_480--Hb_000128_060 Hb_025194_050 Hb_025194_050 Hb_000270_480--Hb_025194_050 Hb_007545_010 Hb_007545_010 Hb_000270_480--Hb_007545_010 Hb_000270_480--Hb_000023_360 Hb_003266_030 Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_007192_030 Hb_007192_030 Hb_000086_080--Hb_007192_030 Hb_000086_080--Hb_073973_090 Hb_000086_080--Hb_003266_030 Hb_000086_080--Hb_011671_260 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110 Hb_000128_060--Hb_000088_260 Hb_000128_060--Hb_073973_090 Hb_000128_060--Hb_000023_360 Hb_001511_090 Hb_001511_090 Hb_000128_060--Hb_001511_090 Hb_001105_040 Hb_001105_040 Hb_000128_060--Hb_001105_040 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_073973_090--Hb_002631_240 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5963 58.0243 114.519 102.645 20.0716 30.313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.1425 63.0665 43.2337 31.1417 138.72

CAGE analysis