Hb_000270_480

Information

Type -
Description -
Location Contig270: 368288-373936
Sequence    

Annotation

kegg
ID rcu:RCOM_1512730
description mannose-1-phosphate guanyltransferase, putative (EC:2.7.7.13)
nr
ID KHG10517.1
description Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
swissprot
ID Q86HG0
description Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1
trembl
ID A0A0B0NCW0
description Mannose-1-phosphate guanyltransferase alpha OS=Gossypium arboreum GN=F383_11944 PE=4 SV=1
Gene Ontology
ID GO:0005777
description mannose-1-phosphate guanyltransferase alpha-b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28231: 368417-373641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_480 0.0 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
2 Hb_000088_260 0.0685866091 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
3 Hb_000128_060 0.0737737604 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
4 Hb_025194_050 0.0772301078 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
5 Hb_001675_140 0.0794263109 - - hypothetical protein L484_026216 [Morus notabilis]
6 Hb_007545_010 0.0818801281 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
7 Hb_000023_360 0.0821345962 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
8 Hb_004957_030 0.0821362309 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
9 Hb_000169_020 0.0830917001 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
10 Hb_048093_010 0.0833629833 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
11 Hb_011671_260 0.0836741208 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
12 Hb_000007_090 0.0849121045 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
13 Hb_008705_020 0.0877890083 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_001141_240 0.088737044 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
15 Hb_073973_090 0.0889353258 - - Aminotransferase ybdL, putative [Ricinus communis]
16 Hb_028487_070 0.0903996761 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001080_300 0.0905095634 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
18 Hb_000086_080 0.0905480619 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001882_010 0.0914331 - - -
20 Hb_015099_030 0.0931480924 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_480 Hb_000270_480 Hb_000088_260 Hb_000088_260 Hb_000270_480--Hb_000088_260 Hb_000128_060 Hb_000128_060 Hb_000270_480--Hb_000128_060 Hb_025194_050 Hb_025194_050 Hb_000270_480--Hb_025194_050 Hb_001675_140 Hb_001675_140 Hb_000270_480--Hb_001675_140 Hb_007545_010 Hb_007545_010 Hb_000270_480--Hb_007545_010 Hb_000023_360 Hb_000023_360 Hb_000270_480--Hb_000023_360 Hb_001269_620 Hb_001269_620 Hb_000088_260--Hb_001269_620 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_073973_090 Hb_073973_090 Hb_000128_060--Hb_073973_090 Hb_000128_060--Hb_000023_360 Hb_000128_060--Hb_001511_090 Hb_001105_040 Hb_001105_040 Hb_000128_060--Hb_001105_040 Hb_025194_050--Hb_001105_040 Hb_000617_250 Hb_000617_250 Hb_025194_050--Hb_000617_250 Hb_001832_200 Hb_001832_200 Hb_025194_050--Hb_001832_200 Hb_007012_030 Hb_007012_030 Hb_025194_050--Hb_007012_030 Hb_068079_010 Hb_068079_010 Hb_025194_050--Hb_068079_010 Hb_001675_140--Hb_000023_360 Hb_011671_260 Hb_011671_260 Hb_001675_140--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001675_140--Hb_000086_080 Hb_001675_140--Hb_000128_060 Hb_001675_140--Hb_073973_090 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000023_360--Hb_000086_080 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20427 14.8483 24.5765 26.7501 5.61422 10.0577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1899 11.7015 10.1821 12.4127 30.546

CAGE analysis