Hb_158530_020

Information

Type -
Description -
Location Contig158530: 86890-101035
Sequence    

Annotation

kegg
ID rcu:RCOM_1588220
description Aspartic proteinase nepenthesin-1 precursor, putative (EC:3.4.23.1)
nr
ID XP_012068262.1
description PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
swissprot
ID Q9LVC3
description Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
trembl
ID A0A067L364
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16060 PE=3 SV=1
Gene Ontology
ID GO:0005768
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14038: 95688-101014
cDNA
(Sanger)
(ID:Location)		 046_A17.ab1: 95725-96958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158530_020 0.0 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
2 Hb_015675_040 0.0616252854 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
3 Hb_000504_180 0.0716894265 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_000185_220 0.0725578871 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_062226_060 0.073279461 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
6 Hb_006059_010 0.0808057019 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
7 Hb_000023_360 0.0812843687 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
8 Hb_001662_130 0.0834095575 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
9 Hb_001226_140 0.0836400187 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
10 Hb_001766_050 0.0842671304 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
11 Hb_000080_130 0.0857102356 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
12 Hb_000364_050 0.0861464382 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_000567_230 0.0867502925 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
14 Hb_001975_150 0.0878465275 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
15 Hb_189216_010 0.0892130189 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
16 Hb_001716_040 0.0895126081 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_000029_140 0.0900435915 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
18 Hb_000340_040 0.0904633699 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
19 Hb_000139_080 0.0907186029 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
20 Hb_000521_240 0.0914670439 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_158530_020 Hb_158530_020 Hb_015675_040 Hb_015675_040 Hb_158530_020--Hb_015675_040 Hb_000504_180 Hb_000504_180 Hb_158530_020--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_158530_020--Hb_000185_220 Hb_062226_060 Hb_062226_060 Hb_158530_020--Hb_062226_060 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_000023_360 Hb_000023_360 Hb_158530_020--Hb_000023_360 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000840_200 Hb_000840_200 Hb_015675_040--Hb_000840_200 Hb_015675_040--Hb_000185_220 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_000185_220--Hb_001975_150 Hb_004951_060 Hb_004951_060 Hb_062226_060--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_062226_060--Hb_007904_230 Hb_000364_050 Hb_000364_050 Hb_062226_060--Hb_000364_050 Hb_062226_060--Hb_000023_360 Hb_000811_070 Hb_000811_070 Hb_062226_060--Hb_000811_070 Hb_000012_310 Hb_000012_310 Hb_006059_010--Hb_000012_310 Hb_002660_170 Hb_002660_170 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27629 6.63632 7.60503 9.33803 3.01099 3.61773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06563 6.83873 6.572 7.15013 12.0613

CAGE analysis