Hb_062226_060

Information

Type -
Description -
Location Contig62226: 24484-30261
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20490g
description POPTRDRAFT_833789; mitochondrial substrate carrier family protein
nr
ID XP_012088383.1
description PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
swissprot
ID Q54MZ4
description Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1
trembl
ID A0A067LKK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01364 PE=3 SV=1
Gene Ontology
ID GO:0005886
description mitochondrial substrate carrier family protein b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51596: 24408-30157 , PASA_asmbl_51597: 28987-29104 , PASA_asmbl_51598: 27542-28609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_060 0.0 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
2 Hb_004951_060 0.0684491109 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
3 Hb_158530_020 0.073279461 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
4 Hb_007904_230 0.0770817661 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
5 Hb_000364_050 0.0773697471 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_000023_360 0.0795374363 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
7 Hb_000811_070 0.0802800122 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
8 Hb_015675_040 0.0804907344 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
9 Hb_001766_050 0.081904122 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
10 Hb_001541_120 0.0851224396 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
11 Hb_001662_130 0.0851847579 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
12 Hb_000080_130 0.0853980685 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
13 Hb_006846_150 0.0870346439 - - conserved hypothetical protein [Ricinus communis]
14 Hb_073973_090 0.0876160626 - - Aminotransferase ybdL, putative [Ricinus communis]
15 Hb_000840_200 0.0884491681 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
16 Hb_000317_260 0.0888856198 - - unknown [Populus trichocarpa]
17 Hb_003878_090 0.0894757897 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
18 Hb_002759_190 0.0903607702 - - PREDICTED: protein NLRC3 [Jatropha curcas]
19 Hb_002303_020 0.091643996 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
20 Hb_044653_040 0.0922907392 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_062226_060 Hb_062226_060 Hb_004951_060 Hb_004951_060 Hb_062226_060--Hb_004951_060 Hb_158530_020 Hb_158530_020 Hb_062226_060--Hb_158530_020 Hb_007904_230 Hb_007904_230 Hb_062226_060--Hb_007904_230 Hb_000364_050 Hb_000364_050 Hb_062226_060--Hb_000364_050 Hb_000023_360 Hb_000023_360 Hb_062226_060--Hb_000023_360 Hb_000811_070 Hb_000811_070 Hb_062226_060--Hb_000811_070 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_001662_130 Hb_001662_130 Hb_004951_060--Hb_001662_130 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004951_060--Hb_000317_260 Hb_006846_150 Hb_006846_150 Hb_004951_060--Hb_006846_150 Hb_015675_040 Hb_015675_040 Hb_158530_020--Hb_015675_040 Hb_000504_180 Hb_000504_180 Hb_158530_020--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_158530_020--Hb_000185_220 Hb_006059_010 Hb_006059_010 Hb_158530_020--Hb_006059_010 Hb_158530_020--Hb_000023_360 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_007904_230--Hb_000811_070 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_000811_070--Hb_006846_150 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_005167_010 Hb_005167_010 Hb_000811_070--Hb_005167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.71863 5.81359 9.57663 8.57807 3.65351 3.38505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.73849 10.3419 5.98484 7.06641 11.9315

CAGE analysis