Hb_005511_140

Information

Type -
Description -
Location Contig5511: 109226-120925
Sequence    

Annotation

kegg
ID rcu:RCOM_0332910
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_002533250.1
description Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
swissprot
ID Q9MA15
description Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=2 SV=1
trembl
ID B9T4T1
description Ubiquinone biosynthesis protein coq-8, putative OS=Ricinus communis GN=RCOM_0332910 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48280: 108832-137423 , PASA_asmbl_48281: 115762-116054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_140 0.0 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
2 Hb_000340_040 0.063478655 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
3 Hb_000023_360 0.0646167777 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
4 Hb_000282_080 0.068196053 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001195_450 0.0776457227 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
6 Hb_000169_020 0.078716576 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
7 Hb_073973_090 0.0794449227 - - Aminotransferase ybdL, putative [Ricinus communis]
8 Hb_022092_030 0.0803625039 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
9 Hb_003053_110 0.0816848621 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_000035_090 0.0835316584 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
11 Hb_012150_030 0.0853256856 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_000941_100 0.0874863464 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
13 Hb_003417_040 0.0898672644 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
14 Hb_001511_090 0.0906808356 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
15 Hb_000529_180 0.0907312821 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
16 Hb_008705_020 0.0910898975 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
17 Hb_001214_050 0.0915704079 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
18 Hb_004375_050 0.0920970502 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_158530_020 0.0940082778 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
20 Hb_009778_060 0.0947925827 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]

Gene co-expression network

sample Hb_005511_140 Hb_005511_140 Hb_000340_040 Hb_000340_040 Hb_005511_140--Hb_000340_040 Hb_000023_360 Hb_000023_360 Hb_005511_140--Hb_000023_360 Hb_000282_080 Hb_000282_080 Hb_005511_140--Hb_000282_080 Hb_001195_450 Hb_001195_450 Hb_005511_140--Hb_001195_450 Hb_000169_020 Hb_000169_020 Hb_005511_140--Hb_000169_020 Hb_073973_090 Hb_073973_090 Hb_005511_140--Hb_073973_090 Hb_000340_040--Hb_000169_020 Hb_022092_030 Hb_022092_030 Hb_000340_040--Hb_022092_030 Hb_001511_090 Hb_001511_090 Hb_000340_040--Hb_001511_090 Hb_006100_020 Hb_006100_020 Hb_000340_040--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_000340_040--Hb_001008_130 Hb_000023_360--Hb_073973_090 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_000282_080--Hb_001195_450 Hb_001314_080 Hb_001314_080 Hb_000282_080--Hb_001314_080 Hb_002758_010 Hb_002758_010 Hb_000282_080--Hb_002758_010 Hb_000023_260 Hb_000023_260 Hb_000282_080--Hb_000023_260 Hb_001080_090 Hb_001080_090 Hb_000282_080--Hb_001080_090 Hb_001723_060 Hb_001723_060 Hb_001195_450--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001195_450--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001195_450--Hb_009778_060 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93853 14.6877 18.1582 14.1139 6.59082 7.88994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7258 13.1707 10.1907 8.89398 30.1629

CAGE analysis