Hb_001511_090

Information

Type -
Description -
Location Contig1511: 134882-147595
Sequence    

Annotation

kegg
ID rcu:RCOM_0839610
description hypothetical protein
nr
ID XP_012086982.1
description PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8M5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01227 PE=4 SV=1
Gene Ontology
ID GO:0070569
description udp-glucose pyrophosphorylase 3 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12764: 135218-136808 , PASA_asmbl_12765: 137316-145668 , PASA_asmbl_12766: 145701-147302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_090 0.0 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
2 Hb_000340_040 0.0766804848 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
3 Hb_000088_260 0.0767051431 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
4 Hb_002259_170 0.0790026732 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
5 Hb_001008_130 0.0795185541 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
6 Hb_000023_360 0.0813452279 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
7 Hb_000169_020 0.0833912552 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
8 Hb_000128_060 0.0834482993 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
9 Hb_007012_030 0.0873362143 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
10 Hb_025194_050 0.0883113324 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
11 Hb_002126_030 0.0905704967 - - ferrochelatase, putative [Ricinus communis]
12 Hb_005511_140 0.0906808356 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_001141_240 0.0915080617 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
14 Hb_000506_110 0.0916116492 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
15 Hb_000680_120 0.0928574971 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
16 Hb_000137_010 0.0929173506 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
17 Hb_006100_020 0.0947730521 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_068804_090 0.0952678177 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
19 Hb_000270_480 0.0972017105 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
20 Hb_000617_250 0.0987284461 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001511_090 Hb_001511_090 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_002259_170 Hb_002259_170 Hb_001511_090--Hb_002259_170 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_000023_360 Hb_000023_360 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_000340_040--Hb_000169_020 Hb_005511_140 Hb_005511_140 Hb_000340_040--Hb_005511_140 Hb_022092_030 Hb_022092_030 Hb_000340_040--Hb_022092_030 Hb_006100_020 Hb_006100_020 Hb_000340_040--Hb_006100_020 Hb_000340_040--Hb_001008_130 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_001269_620 Hb_001269_620 Hb_000088_260--Hb_001269_620 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_000452_030 Hb_000452_030 Hb_002259_170--Hb_000452_030 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_033312_130 Hb_033312_130 Hb_001008_130--Hb_033312_130 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_001008_130--Hb_006100_020 Hb_048476_080 Hb_048476_080 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_000960_080 Hb_000960_080 Hb_001008_130--Hb_000960_080 Hb_073973_090 Hb_073973_090 Hb_000023_360--Hb_073973_090 Hb_000023_360--Hb_005511_140 Hb_000086_080 Hb_000086_080 Hb_000023_360--Hb_000086_080 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67287 11.131 12.7215 9.33438 2.93996 3.3583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.11431 6.56876 4.12268 7.58307 16.17

CAGE analysis