Hb_001269_620

Information

Type -
Description -
Location Contig1269: 655680-660490
Sequence    

Annotation

kegg
ID rcu:RCOM_1442120
description RNA splicing protein mrs2, mitochondrial, putative
nr
ID XP_011034560.1
description PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
swissprot
ID Q9S9N4
description Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1
trembl
ID B9RGM7
description RNA splicing protein mrs2, mitochondrial, putative OS=Ricinus communis GN=RCOM_1442120 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08248: 655755-656022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_620 0.0 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
2 Hb_001277_050 0.0601591736 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
3 Hb_005686_130 0.0694731256 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
4 Hb_000088_260 0.0697943124 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
5 Hb_049575_010 0.078301197 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
6 Hb_001147_050 0.0797369399 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
7 Hb_000235_070 0.08338495 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
8 Hb_000638_130 0.0857827849 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
9 Hb_002534_130 0.0889897692 - - membrane associated ring finger 1,8, putative [Ricinus communis]
10 Hb_001014_060 0.0922059955 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_000025_350 0.0937754499 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
12 Hb_000330_090 0.0964222979 - - ornithine carbamoyltransferase, putative [Ricinus communis]
13 Hb_000035_350 0.0968091483 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_061256_010 0.0986627762 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
15 Hb_027506_040 0.0988130909 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
16 Hb_003913_130 0.0991128666 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
17 Hb_002259_170 0.1013227332 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
18 Hb_000510_170 0.1019546447 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
19 Hb_006438_020 0.1039935719 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
20 Hb_000193_260 0.1044230829 - - PREDICTED: protein NEN1 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_620 Hb_001269_620 Hb_001277_050 Hb_001277_050 Hb_001269_620--Hb_001277_050 Hb_005686_130 Hb_005686_130 Hb_001269_620--Hb_005686_130 Hb_000088_260 Hb_000088_260 Hb_001269_620--Hb_000088_260 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_001147_050 Hb_001147_050 Hb_001269_620--Hb_001147_050 Hb_000235_070 Hb_000235_070 Hb_001269_620--Hb_000235_070 Hb_001277_050--Hb_005686_130 Hb_001277_050--Hb_001147_050 Hb_001277_050--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_001277_050--Hb_000638_130 Hb_002534_130 Hb_002534_130 Hb_001277_050--Hb_002534_130 Hb_005686_130--Hb_000638_130 Hb_005686_130--Hb_002534_130 Hb_000510_170 Hb_000510_170 Hb_005686_130--Hb_000510_170 Hb_005686_130--Hb_000088_260 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_073973_090 Hb_073973_090 Hb_049575_010--Hb_073973_090 Hb_000330_090 Hb_000330_090 Hb_049575_010--Hb_000330_090 Hb_007904_230 Hb_007904_230 Hb_049575_010--Hb_007904_230 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050 Hb_001147_050--Hb_000330_090 Hb_002693_030 Hb_002693_030 Hb_001147_050--Hb_002693_030 Hb_002232_430 Hb_002232_430 Hb_001147_050--Hb_002232_430 Hb_006637_030 Hb_006637_030 Hb_001147_050--Hb_006637_030 Hb_061256_010 Hb_061256_010 Hb_000235_070--Hb_061256_010 Hb_005000_080 Hb_005000_080 Hb_000235_070--Hb_005000_080 Hb_027506_040 Hb_027506_040 Hb_000235_070--Hb_027506_040 Hb_015967_030 Hb_015967_030 Hb_000235_070--Hb_015967_030 Hb_000235_070--Hb_000088_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26316 3.88744 6.91035 4.84916 0.940045 1.24915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87764 3.6088 3.30651 3.54051 5.63607

CAGE analysis