Hb_000638_130

Information

Type -
Description -
Location Contig638: 114808-121088
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06490g
description POPTRDRAFT_818252; 5'-bisphosphate nucleotidase 2 family protein
nr
ID XP_012070587.1
description PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
swissprot
ID Q42546
description SAL1 phosphatase OS=Arabidopsis thaliana GN=SAL1 PE=1 SV=1
trembl
ID A0A067KT55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03683 PE=4 SV=1
Gene Ontology
ID GO:0005634
description sal1 phosphatase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52016: 115152-118916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_130 0.0 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
2 Hb_000025_350 0.0712790044 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
3 Hb_001014_060 0.0745207058 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_005686_130 0.0753819113 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
5 Hb_000510_170 0.0755243119 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
6 Hb_003913_130 0.0787040828 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
7 Hb_065968_010 0.0821280813 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
8 Hb_001269_620 0.0857827849 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
9 Hb_004994_180 0.0867505249 - - malic enzyme, putative [Ricinus communis]
10 Hb_006059_010 0.0869978711 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
11 Hb_001269_130 0.0876626012 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
12 Hb_001014_070 0.0877767069 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
13 Hb_074197_040 0.0904321158 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
14 Hb_000358_020 0.0919295285 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
15 Hb_000979_130 0.0935556137 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
16 Hb_000035_350 0.0939008017 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
17 Hb_001357_200 0.0943424142 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
18 Hb_002445_030 0.0946021183 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
19 Hb_000227_160 0.0947835197 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
20 Hb_006824_010 0.0950497059 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_130 Hb_000638_130 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_000510_170 Hb_000510_170 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_000025_350--Hb_001014_060 Hb_001357_200 Hb_001357_200 Hb_000025_350--Hb_001357_200 Hb_001014_070 Hb_001014_070 Hb_000025_350--Hb_001014_070 Hb_000025_350--Hb_003913_130 Hb_000304_080 Hb_000304_080 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050 Hb_001014_060--Hb_001014_070 Hb_001014_060--Hb_001357_200 Hb_001014_060--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_001014_060--Hb_000120_640 Hb_001269_620 Hb_001269_620 Hb_005686_130--Hb_001269_620 Hb_001277_050 Hb_001277_050 Hb_005686_130--Hb_001277_050 Hb_002534_130 Hb_002534_130 Hb_005686_130--Hb_002534_130 Hb_005686_130--Hb_000510_170 Hb_000088_260 Hb_000088_260 Hb_005686_130--Hb_000088_260 Hb_116349_120 Hb_116349_120 Hb_000510_170--Hb_116349_120 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_000666_010 Hb_000666_010 Hb_000510_170--Hb_000666_010 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_003913_130--Hb_001357_200 Hb_007533_040 Hb_007533_040 Hb_003913_130--Hb_007533_040 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62647 8.81733 16.3629 17.7155 3.70244 4.25155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43886 9.25254 12.5842 13.637 16.5854

CAGE analysis