Hb_001357_200

Information

Type transcription factor
Description TF Family: Rcd1-like
Location Contig1357: 138844-145673
Sequence    

Annotation

kegg
ID tcc:TCM_040506
description Cell differentiation, Rcd1-like protein isoform 1
nr
ID XP_012070881.1
description PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q5PQL2
description Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1
trembl
ID F6HER0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09928: 138860-145589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_200 0.0 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
2 Hb_000025_350 0.0419500729 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
3 Hb_001014_060 0.0529343038 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_003913_130 0.0612449012 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
5 Hb_001014_070 0.0629894252 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
6 Hb_000304_080 0.072781046 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
7 Hb_007533_040 0.0751776524 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_000120_640 0.0820005381 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001124_130 0.0875189115 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_171215_010 0.0904831525 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_002042_050 0.091195051 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
12 Hb_000260_460 0.0925457867 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
13 Hb_000638_130 0.0943424142 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
14 Hb_000567_230 0.0986137517 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
15 Hb_022092_030 0.1007378098 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
16 Hb_001301_270 0.1020282597 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
17 Hb_000788_030 0.1025957986 - - PREDICTED: dynamin-2A [Jatropha curcas]
18 Hb_000703_190 0.1026554287 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
19 Hb_000363_290 0.1028479354 - - fimbrin, putative [Ricinus communis]
20 Hb_004583_010 0.103542887 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001357_200 Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_001357_200--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_001357_200--Hb_001014_060 Hb_003913_130 Hb_003913_130 Hb_001357_200--Hb_003913_130 Hb_001014_070 Hb_001014_070 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_007533_040 Hb_007533_040 Hb_001357_200--Hb_007533_040 Hb_000025_350--Hb_001014_060 Hb_000025_350--Hb_001014_070 Hb_000025_350--Hb_003913_130 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050 Hb_001014_060--Hb_001014_070 Hb_000638_130 Hb_000638_130 Hb_001014_060--Hb_000638_130 Hb_001014_060--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_001014_060--Hb_000120_640 Hb_003913_130--Hb_007533_040 Hb_003913_130--Hb_000638_130 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_000363_290 Hb_000363_290 Hb_001014_070--Hb_000363_290 Hb_000046_540 Hb_000046_540 Hb_001014_070--Hb_000046_540 Hb_074197_040 Hb_074197_040 Hb_001014_070--Hb_074197_040 Hb_001124_130 Hb_001124_130 Hb_000304_080--Hb_001124_130 Hb_000304_080--Hb_002042_050 Hb_000476_060 Hb_000476_060 Hb_000304_080--Hb_000476_060 Hb_000567_230 Hb_000567_230 Hb_000304_080--Hb_000567_230 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_007533_040--Hb_000140_090 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35191 8.00802 14.0636 10.4498 4.20282 5.06338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.23937 6.79669 12.5204 7.57669 13.5707

CAGE analysis