Hb_001124_130

Information

Type transcription factor
Description TF Family: TUB
Location Contig1124: 175626-179450
Sequence    

Annotation

kegg
ID rcu:RCOM_0679690
description phosphoric diester hydrolase, putative
nr
ID XP_002516864.1
description phosphoric diester hydrolase, putative [Ricinus communis]
swissprot
ID Q8VY21
description Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=1 SV=1
trembl
ID B9RSZ5
description Tubby-like F-box protein OS=Ricinus communis GN=RCOM_0679690 PE=3 SV=1
Gene Ontology
ID GO:0016787
description tubby-like f-box protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03814: 175620-179404
cDNA
(Sanger)
(ID:Location)		 009_O12.ab1: 176096-177680 , 024_C12.ab1: 175624-175937 , 027_I16.ab1: 175624-176015 , 032_P20.ab1: 175620-176119

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_130 0.0 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
2 Hb_000304_080 0.061926097 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_007894_150 0.0652837293 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
4 Hb_002042_050 0.0684926622 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
5 Hb_002071_070 0.0719367336 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_010068_080 0.0727663618 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
7 Hb_000025_350 0.07619487 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
8 Hb_003098_070 0.0775544824 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
9 Hb_000363_310 0.0776525375 - - DNA topoisomerase type I, putative [Ricinus communis]
10 Hb_002830_010 0.0787482624 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
11 Hb_033312_040 0.081191165 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
12 Hb_000365_230 0.0814594731 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
13 Hb_008033_040 0.0820669688 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
14 Hb_002272_030 0.0828133111 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
15 Hb_002007_080 0.0840266743 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_003913_130 0.0849628111 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
17 Hb_006913_020 0.0856437524 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
18 Hb_001014_070 0.0860129648 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
19 Hb_003228_110 0.0860229053 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
20 Hb_006189_020 0.0865329791 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]

Gene co-expression network

sample Hb_001124_130 Hb_001124_130 Hb_000304_080 Hb_000304_080 Hb_001124_130--Hb_000304_080 Hb_007894_150 Hb_007894_150 Hb_001124_130--Hb_007894_150 Hb_002042_050 Hb_002042_050 Hb_001124_130--Hb_002042_050 Hb_002071_070 Hb_002071_070 Hb_001124_130--Hb_002071_070 Hb_010068_080 Hb_010068_080 Hb_001124_130--Hb_010068_080 Hb_000025_350 Hb_000025_350 Hb_001124_130--Hb_000025_350 Hb_000304_080--Hb_000025_350 Hb_001357_200 Hb_001357_200 Hb_000304_080--Hb_001357_200 Hb_000304_080--Hb_002042_050 Hb_000476_060 Hb_000476_060 Hb_000304_080--Hb_000476_060 Hb_000567_230 Hb_000567_230 Hb_000304_080--Hb_000567_230 Hb_004109_320 Hb_004109_320 Hb_007894_150--Hb_004109_320 Hb_164390_010 Hb_164390_010 Hb_007894_150--Hb_164390_010 Hb_000365_230 Hb_000365_230 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_001014_060 Hb_001014_060 Hb_000025_350--Hb_001014_060 Hb_000025_350--Hb_001357_200 Hb_001014_070 Hb_001014_070 Hb_000025_350--Hb_001014_070 Hb_003913_130 Hb_003913_130 Hb_000025_350--Hb_003913_130 Hb_000025_350--Hb_002042_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38174 20.2064 27.0798 18.1851 12.4147 12.095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4653 17.0943 21.0342 20.7637 24.9407

CAGE analysis