Hb_001226_150

Information

Type -
Description -
Location Contig1226: 206366-218894
Sequence    

Annotation

kegg
ID tcc:TCM_037331
description AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
nr
ID XP_012077241.1
description PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
swissprot
ID Q6TGC6
description Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1
trembl
ID A0A067KD52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07638 PE=4 SV=1
Gene Ontology
ID GO:0004697
description serine threonine-protein kinase tricorner

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06867: 206475-218834 , PASA_asmbl_06868: 208033-210271 , PASA_asmbl_06870: 208562-209025 , PASA_asmbl_06871: 210480-210764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_150 0.0 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
2 Hb_170416_010 0.0544745068 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
3 Hb_005867_070 0.0564489344 - - DNA binding protein, putative [Ricinus communis]
4 Hb_005000_170 0.0569984583 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
5 Hb_000339_040 0.0579252749 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
6 Hb_007007_120 0.0591091138 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
7 Hb_007894_150 0.0628073881 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
8 Hb_138435_010 0.0642198898 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
9 Hb_003861_050 0.0642452982 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
10 Hb_105105_010 0.0645204186 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
11 Hb_007765_100 0.0656030308 - - PREDICTED: helicase SKI2W [Jatropha curcas]
12 Hb_012506_030 0.0659364778 - - AP-2 complex subunit alpha, putative [Ricinus communis]
13 Hb_002876_230 0.0660973933 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
14 Hb_000359_040 0.0672173912 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000363_310 0.0686859394 - - DNA topoisomerase type I, putative [Ricinus communis]
16 Hb_004994_010 0.0687850549 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
17 Hb_005730_040 0.0689946272 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
18 Hb_003428_010 0.0693013363 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
19 Hb_004052_080 0.0695217736 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001153_210 0.0698655946 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001226_150 Hb_001226_150 Hb_170416_010 Hb_170416_010 Hb_001226_150--Hb_170416_010 Hb_005867_070 Hb_005867_070 Hb_001226_150--Hb_005867_070 Hb_005000_170 Hb_005000_170 Hb_001226_150--Hb_005000_170 Hb_000339_040 Hb_000339_040 Hb_001226_150--Hb_000339_040 Hb_007007_120 Hb_007007_120 Hb_001226_150--Hb_007007_120 Hb_007894_150 Hb_007894_150 Hb_001226_150--Hb_007894_150 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_005867_070--Hb_000339_040 Hb_005000_170--Hb_007894_150 Hb_000329_800 Hb_000329_800 Hb_005000_170--Hb_000329_800 Hb_004846_220 Hb_004846_220 Hb_005000_170--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_000339_040--Hb_004837_180 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_007007_120--Hb_002876_230 Hb_003513_010 Hb_003513_010 Hb_007007_120--Hb_003513_010 Hb_007007_120--Hb_000339_040 Hb_004109_320 Hb_004109_320 Hb_007894_150--Hb_004109_320 Hb_164390_010 Hb_164390_010 Hb_007894_150--Hb_164390_010 Hb_000365_230 Hb_000365_230 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5673 21.2306 28.4907 16.3418 18.1146 18.7485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6995 14.8876 17.9769 18.1643 20.9803

CAGE analysis