Hb_116349_120

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig116349: 62169-69317
Sequence    

Annotation

kegg
ID rcu:RCOM_0699730
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012092011.1
description PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID P52901
description Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=E1 ALPHA PE=2 SV=2
trembl
ID A0A067JBT3
description Pyruvate dehydrogenase E1 component subunit alpha OS=Jatropha curcas GN=JCGZ_21747 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pyruvate dehydrogenase e1 component subunit mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05057: 62247-69232 , PASA_asmbl_05058: 62365-63797
cDNA
(Sanger)
(ID:Location)		 049_N20.ab1: 68665-69217

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_120 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000510_170 0.058888892 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
3 Hb_001117_110 0.0741477371 - - PREDICTED: dynamin-2A [Jatropha curcas]
4 Hb_013726_050 0.0754334169 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
5 Hb_005694_060 0.079725521 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
6 Hb_000570_020 0.0802590244 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
7 Hb_000375_300 0.0820838999 - - PREDICTED: cyanate hydratase [Jatropha curcas]
8 Hb_000007_090 0.0821199486 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
9 Hb_015884_020 0.0828190596 - - PREDICTED: protein PIR [Jatropha curcas]
10 Hb_002687_200 0.0841952719 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000979_130 0.0843632191 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
12 Hb_000395_110 0.0865076542 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
13 Hb_001754_020 0.0865949716 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
14 Hb_007545_010 0.0885938238 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
15 Hb_000088_260 0.0897423637 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
16 Hb_001141_240 0.0923163623 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
17 Hb_002445_030 0.0923294559 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
18 Hb_010672_020 0.0937491572 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
19 Hb_000815_300 0.094759383 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
20 Hb_002272_240 0.0951248373 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_116349_120 Hb_116349_120 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_001117_110 Hb_001117_110 Hb_116349_120--Hb_001117_110 Hb_013726_050 Hb_013726_050 Hb_116349_120--Hb_013726_050 Hb_005694_060 Hb_005694_060 Hb_116349_120--Hb_005694_060 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300 Hb_000638_130 Hb_000638_130 Hb_000510_170--Hb_000638_130 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_000666_010 Hb_000666_010 Hb_000510_170--Hb_000666_010 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_001117_110--Hb_005694_060 Hb_030736_040 Hb_030736_040 Hb_001117_110--Hb_030736_040 Hb_015884_020 Hb_015884_020 Hb_001117_110--Hb_015884_020 Hb_106890_010 Hb_106890_010 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_002272_240 Hb_002272_240 Hb_013726_050--Hb_002272_240 Hb_002304_050 Hb_002304_050 Hb_013726_050--Hb_002304_050 Hb_005741_040 Hb_005741_040 Hb_013726_050--Hb_005741_040 Hb_002687_180 Hb_002687_180 Hb_013726_050--Hb_002687_180 Hb_013726_050--Hb_002445_030 Hb_005694_060--Hb_015884_020 Hb_005694_060--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_005694_060--Hb_000585_110 Hb_005694_060--Hb_030736_040 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_002193_060 Hb_002193_060 Hb_000375_300--Hb_002193_060 Hb_018845_010 Hb_018845_010 Hb_000375_300--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_000375_300--Hb_000007_090 Hb_001619_060 Hb_001619_060 Hb_000375_300--Hb_001619_060 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2068 40.3896 59.114 82.0553 15.2787 12.7183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9511 19.2416 25.9023 38.8152 67.3208

CAGE analysis