Hb_005694_060

Information

Type -
Description -
Location Contig5694: 42276-49767
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09690g
description POPTRDRAFT_664148; hypothetical protein
nr
ID XP_012083155.1
description PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
swissprot
ID Q9LNJ9
description Bifunctional fucokinase/fucose pyrophosphorylase OS=Arabidopsis thaliana GN=FKGP PE=1 SV=2
trembl
ID A0A067K846
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14226 PE=3 SV=1
Gene Ontology
ID GO:0005737
description bifunctional fucokinase fucose pyrophosphorylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49230: 42275-45575 , PASA_asmbl_49231: 45607-49600 , PASA_asmbl_49233: 48080-48238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_060 0.0 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
2 Hb_015884_020 0.041817512 - - PREDICTED: protein PIR [Jatropha curcas]
3 Hb_001117_110 0.0470459853 - - PREDICTED: dynamin-2A [Jatropha curcas]
4 Hb_000979_130 0.0659486831 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
5 Hb_000585_110 0.0778794886 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
6 Hb_030736_040 0.0789747306 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
7 Hb_116349_120 0.079725521 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_002249_080 0.080707961 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
9 Hb_106890_010 0.0809303733 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
10 Hb_005571_010 0.0852500336 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
11 Hb_019654_020 0.0857310486 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
12 Hb_000027_200 0.087174948 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
13 Hb_006970_020 0.0874396815 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
14 Hb_000417_390 0.0896652301 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
15 Hb_055690_010 0.091177578 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_001504_060 0.0914096545 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
17 Hb_003355_010 0.0914491042 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_002687_200 0.0930270352 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000367_180 0.0946714059 - - Heparanase-2, putative [Ricinus communis]
20 Hb_005854_040 0.0951911844 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005694_060 Hb_005694_060 Hb_015884_020 Hb_015884_020 Hb_005694_060--Hb_015884_020 Hb_001117_110 Hb_001117_110 Hb_005694_060--Hb_001117_110 Hb_000979_130 Hb_000979_130 Hb_005694_060--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_005694_060--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_005694_060--Hb_030736_040 Hb_116349_120 Hb_116349_120 Hb_005694_060--Hb_116349_120 Hb_015884_020--Hb_001117_110 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_001117_110--Hb_030736_040 Hb_001117_110--Hb_116349_120 Hb_106890_010 Hb_106890_010 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_000260_510 Hb_000260_510 Hb_000979_130--Hb_000260_510 Hb_000367_180 Hb_000367_180 Hb_000979_130--Hb_000367_180 Hb_000979_130--Hb_019654_020 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_030736_040--Hb_106890_010 Hb_030736_040--Hb_055690_010 Hb_003355_010 Hb_003355_010 Hb_030736_040--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_013726_050 Hb_013726_050 Hb_116349_120--Hb_013726_050 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47981 5.40794 8.97713 11.7708 3.06898 2.65835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90678 2.88784 4.4532 7.68478 13.0668

CAGE analysis