Hb_000570_020

Information

Type -
Description -
Location Contig570: 25781-29089
Sequence    

Annotation

kegg
ID rcu:RCOM_1584130
description beta-1,3-glucuronyltransferase, putative (EC:2.4.1.135)
nr
ID XP_012068106.1
description PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
swissprot
ID Q9SXC4
description Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=2 SV=2
trembl
ID A0A067L2R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15945 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -xylosyltransferase irx9h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49315: 26699-28902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000570_020 0.0 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
2 Hb_004943_040 0.07124931 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
3 Hb_116349_120 0.0802590244 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_007537_030 0.082154875 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
5 Hb_000375_300 0.0894332372 - - PREDICTED: cyanate hydratase [Jatropha curcas]
6 Hb_000283_140 0.0895955439 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_028639_030 0.0923242431 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
8 Hb_004109_050 0.0928874702 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
9 Hb_000638_060 0.09537569 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
10 Hb_000157_140 0.0962185625 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_001754_020 0.0974593807 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
12 Hb_000928_120 0.0977648816 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
13 Hb_021576_070 0.0979765519 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
14 Hb_004326_010 0.0999644 - - cationic amino acid transporter, putative [Ricinus communis]
15 Hb_001619_060 0.1006588416 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
16 Hb_005694_060 0.1028649174 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
17 Hb_001865_100 0.1031941198 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
18 Hb_000342_170 0.10785597 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
19 Hb_002046_060 0.1097118812 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
20 Hb_000418_020 0.1110306917 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000570_020 Hb_000570_020 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_004943_040--Hb_000283_140 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_001117_110 Hb_001117_110 Hb_116349_120--Hb_001117_110 Hb_013726_050 Hb_013726_050 Hb_116349_120--Hb_013726_050 Hb_005694_060 Hb_005694_060 Hb_116349_120--Hb_005694_060 Hb_116349_120--Hb_000375_300 Hb_007537_030--Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010 Hb_002193_060 Hb_002193_060 Hb_000375_300--Hb_002193_060 Hb_000375_300--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_000375_300--Hb_000007_090 Hb_001619_060 Hb_001619_060 Hb_000375_300--Hb_001619_060 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_001216_110 Hb_001216_110 Hb_028639_030--Hb_001216_110 Hb_028639_030--Hb_021576_070 Hb_011360_110 Hb_011360_110 Hb_028639_030--Hb_011360_110 Hb_000679_040 Hb_000679_040 Hb_028639_030--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_028639_030--Hb_001195_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88085 7.38679 9.47246 17.8795 2.01172 2.15949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03934 3.36018 3.82447 6.47736 12.7848

CAGE analysis