Hb_013726_050

Information

Type -
Description -
Location Contig13726: 43718-49228
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003145mg
description hypothetical protein
nr
ID XP_012083471.1
description PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
swissprot
ID Q93W95
description Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=2 SV=1
trembl
ID A0A067K0W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14454 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10284: 43955-49164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013726_050 0.0 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
2 Hb_002272_240 0.0528730629 - - catalytic, putative [Ricinus communis]
3 Hb_002304_050 0.0610535548 - - pyruvate kinase, putative [Ricinus communis]
4 Hb_005741_040 0.0705863805 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
5 Hb_002687_180 0.0731071897 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
6 Hb_002445_030 0.0734457679 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
7 Hb_116349_120 0.0754334169 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_004375_110 0.0778621324 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
9 Hb_006120_050 0.0838735724 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
10 Hb_001250_050 0.0842019326 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
11 Hb_001159_060 0.0842275549 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
12 Hb_000815_300 0.0867146881 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_000753_160 0.0878593315 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
14 Hb_000317_110 0.0902609721 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_002552_040 0.0904331451 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
16 Hb_006438_020 0.0923765768 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
17 Hb_001754_020 0.0925000296 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
18 Hb_000197_180 0.0927967491 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
19 Hb_003777_030 0.093091065 - - Exocyst complex component, putative [Ricinus communis]
20 Hb_001799_160 0.0943644257 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013726_050 Hb_013726_050 Hb_002272_240 Hb_002272_240 Hb_013726_050--Hb_002272_240 Hb_002304_050 Hb_002304_050 Hb_013726_050--Hb_002304_050 Hb_005741_040 Hb_005741_040 Hb_013726_050--Hb_005741_040 Hb_002687_180 Hb_002687_180 Hb_013726_050--Hb_002687_180 Hb_002445_030 Hb_002445_030 Hb_013726_050--Hb_002445_030 Hb_116349_120 Hb_116349_120 Hb_013726_050--Hb_116349_120 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_007919_110 Hb_007919_110 Hb_002272_240--Hb_007919_110 Hb_006120_050 Hb_006120_050 Hb_002272_240--Hb_006120_050 Hb_002272_240--Hb_002304_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020 Hb_000753_160 Hb_000753_160 Hb_002304_050--Hb_000753_160 Hb_002304_050--Hb_002687_180 Hb_003449_100 Hb_003449_100 Hb_002304_050--Hb_003449_100 Hb_001250_050 Hb_001250_050 Hb_002304_050--Hb_001250_050 Hb_000260_400 Hb_000260_400 Hb_005741_040--Hb_000260_400 Hb_005741_040--Hb_002687_180 Hb_002849_050 Hb_002849_050 Hb_005741_040--Hb_002849_050 Hb_000599_360 Hb_000599_360 Hb_005741_040--Hb_000599_360 Hb_000317_110 Hb_000317_110 Hb_005741_040--Hb_000317_110 Hb_001279_190 Hb_001279_190 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_002687_180--Hb_001250_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_000173_130 Hb_000173_130 Hb_002445_030--Hb_000173_130 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_008289_040 Hb_008289_040 Hb_002445_030--Hb_008289_040 Hb_002445_030--Hb_002552_040 Hb_002445_030--Hb_002687_180 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_001117_110 Hb_001117_110 Hb_116349_120--Hb_001117_110 Hb_005694_060 Hb_005694_060 Hb_116349_120--Hb_005694_060 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.3725 12.0311 17.4264 19.3635 5.5137 3.96513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91325 4.39267 7.22655 9.36811 13.077

CAGE analysis