Hb_002849_050

Information

Type -
Description -
Location Contig2849: 36258-40200
Sequence    

Annotation

kegg
ID rcu:RCOM_1616320
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.25)
nr
ID XP_012083324.1
description PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
swissprot
ID Q3EDL4
description Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2
trembl
ID A0A067K9T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14355 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable serine threonine-protein kinase at1g01540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29821: 36315-39486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_050 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
2 Hb_005741_040 0.0784553045 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
3 Hb_024758_020 0.0816562349 - - acyl-CoA binding protein 3B [Vernicia fordii]
4 Hb_011188_010 0.0896587344 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
5 Hb_009296_020 0.0942038408 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
6 Hb_001279_020 0.0964973005 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
7 Hb_001414_010 0.0971665738 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
8 Hb_009078_020 0.0987658881 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_000317_110 0.103186568 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000300_560 0.1037108263 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
11 Hb_000477_070 0.1040166986 - - histone h2a, putative [Ricinus communis]
12 Hb_000007_410 0.1042313991 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
13 Hb_002301_030 0.1044676614 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
14 Hb_000649_330 0.104881287 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
15 Hb_027043_010 0.1052626731 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
16 Hb_001411_130 0.1054875222 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
17 Hb_000599_360 0.1057091687 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_000260_400 0.1060944725 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
19 Hb_000098_180 0.107315608 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
20 Hb_000510_150 0.1080617095 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_050 Hb_002849_050 Hb_005741_040 Hb_005741_040 Hb_002849_050--Hb_005741_040 Hb_024758_020 Hb_024758_020 Hb_002849_050--Hb_024758_020 Hb_011188_010 Hb_011188_010 Hb_002849_050--Hb_011188_010 Hb_009296_020 Hb_009296_020 Hb_002849_050--Hb_009296_020 Hb_001279_020 Hb_001279_020 Hb_002849_050--Hb_001279_020 Hb_001414_010 Hb_001414_010 Hb_002849_050--Hb_001414_010 Hb_000260_400 Hb_000260_400 Hb_005741_040--Hb_000260_400 Hb_002687_180 Hb_002687_180 Hb_005741_040--Hb_002687_180 Hb_013726_050 Hb_013726_050 Hb_005741_040--Hb_013726_050 Hb_000599_360 Hb_000599_360 Hb_005741_040--Hb_000599_360 Hb_000317_110 Hb_000317_110 Hb_005741_040--Hb_000317_110 Hb_158845_060 Hb_158845_060 Hb_024758_020--Hb_158845_060 Hb_005298_020 Hb_005298_020 Hb_024758_020--Hb_005298_020 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_001414_010--Hb_160608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63087 9.52859 16.7913 14.1996 3.24029 4.80833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06865 1.47668 3.21824 11.2705 12.5013

CAGE analysis