Hb_001053_080

Information

Type -
Description -
Location Contig1053: 54346-62029
Sequence    

Annotation

kegg
ID rcu:RCOM_0493240
description Cellulose synthase A catalytic subunit 6 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_010088232.1
description OsCesA3 protein [Morus notabilis]
swissprot
ID Q941L0
description Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2
trembl
ID W9QF53
description Cellulose synthase OS=Morus notabilis GN=L484_012515 PE=3 SV=1
Gene Ontology
ID GO:0005768
description cellulose synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01779: 54448-56848 , PASA_asmbl_01780: 57087-58181 , PASA_asmbl_01781: 60409-61295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_080 0.0 - - OsCesA3 protein [Morus notabilis]
2 Hb_001279_090 0.0685121056 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
3 Hb_001279_020 0.0726236937 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
4 Hb_006588_160 0.0844017698 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_001140_180 0.0907630733 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
6 Hb_000001_090 0.096180149 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
7 Hb_000358_210 0.0972700215 - - oligosaccharyl transferase, putative [Ricinus communis]
8 Hb_010172_010 0.0976368187 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
9 Hb_001411_130 0.0978548633 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
10 Hb_002837_040 0.1018167173 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
11 Hb_000317_110 0.1047896793 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000562_070 0.1051739634 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
13 Hb_000862_100 0.1077843594 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
14 Hb_000866_070 0.1083165194 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
15 Hb_001450_020 0.1103241318 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
16 Hb_000258_220 0.1122298622 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
17 Hb_029552_020 0.112676686 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002284_100 0.1128397133 - - ribophorin, putative [Ricinus communis]
19 Hb_002942_230 0.1130175559 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
20 Hb_004052_180 0.1132429727 - - PREDICTED: protein COBRA-like [Jatropha curcas]

Gene co-expression network

sample Hb_001053_080 Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001053_080--Hb_001279_090 Hb_001279_020 Hb_001279_020 Hb_001053_080--Hb_001279_020 Hb_006588_160 Hb_006588_160 Hb_001053_080--Hb_006588_160 Hb_001140_180 Hb_001140_180 Hb_001053_080--Hb_001140_180 Hb_000001_090 Hb_000001_090 Hb_001053_080--Hb_000001_090 Hb_000358_210 Hb_000358_210 Hb_001053_080--Hb_000358_210 Hb_001279_090--Hb_001279_020 Hb_000808_210 Hb_000808_210 Hb_001279_090--Hb_000808_210 Hb_000302_190 Hb_000302_190 Hb_001279_090--Hb_000302_190 Hb_001279_090--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001279_090--Hb_070624_010 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_000154_050 Hb_000154_050 Hb_006588_160--Hb_000154_050 Hb_004013_030 Hb_004013_030 Hb_006588_160--Hb_004013_030 Hb_006588_160--Hb_000001_090 Hb_002837_040 Hb_002837_040 Hb_006588_160--Hb_002837_040 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_001140_180--Hb_029552_020 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001140_180--Hb_001279_020 Hb_001140_180--Hb_000562_070 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_000866_070 Hb_000866_070 Hb_000001_090--Hb_000866_070 Hb_029584_120 Hb_029584_120 Hb_000001_090--Hb_029584_120 Hb_002942_230 Hb_002942_230 Hb_000001_090--Hb_002942_230 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_074399_010 Hb_074399_010 Hb_000001_090--Hb_074399_010 Hb_000265_070 Hb_000265_070 Hb_000358_210--Hb_000265_070 Hb_002392_020 Hb_002392_020 Hb_000358_210--Hb_002392_020 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.78184 7.73902 19.2626 16.9648 9.7405 6.3704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62982 1.4335 4.42463 10.2134 16.4746

CAGE analysis