Hb_002284_100

Information

Type -
Description -
Location Contig2284: 77355-81091
Sequence    

Annotation

kegg
ID rcu:RCOM_1601890
description ribophorin, putative (EC:2.4.1.119)
nr
ID XP_002510712.1
description ribophorin, putative [Ricinus communis]
swissprot
ID Q9SFX3
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Arabidopsis thaliana GN=OST1A PE=2 SV=1
trembl
ID B9R8R9
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Ricinus communis GN=RCOM_1601890 PE=3 SV=1
Gene Ontology
ID GO:0016021
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23804: 77380-81093
cDNA
(Sanger)
(ID:Location)		 047_K11r.ab1: 74243-77190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_100 0.0 - - ribophorin, putative [Ricinus communis]
2 Hb_002552_040 0.085610776 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
3 Hb_002392_020 0.0879111673 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_000358_210 0.0879800385 - - oligosaccharyl transferase, putative [Ricinus communis]
5 Hb_011214_110 0.08832164 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
6 Hb_005846_050 0.0893234386 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
7 Hb_019654_020 0.0937534765 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
8 Hb_015884_020 0.0957579156 - - PREDICTED: protein PIR [Jatropha curcas]
9 Hb_024570_040 0.0971982463 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
10 Hb_022092_010 0.099498337 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
11 Hb_001246_130 0.1000072491 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
12 Hb_002687_200 0.1021140194 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001434_020 0.1025523709 - - hypothetical protein RCOM_0841800 [Ricinus communis]
14 Hb_001689_040 0.102847686 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
15 Hb_002007_260 0.1037878562 - - beta-mannosidase, putative [Ricinus communis]
16 Hb_001226_130 0.1059821605 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_002639_030 0.1064761162 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
18 Hb_000406_210 0.106954834 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
19 Hb_000260_400 0.1073657345 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
20 Hb_010172_010 0.1079599603 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_100 Hb_002284_100 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_002392_020 Hb_002392_020 Hb_002284_100--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_002284_100--Hb_000358_210 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_003490_060 Hb_003490_060 Hb_002392_020--Hb_003490_060 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_000265_070 Hb_000265_070 Hb_000358_210--Hb_000265_070 Hb_070624_010 Hb_070624_010 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_000358_210--Hb_003490_060 Hb_004223_140 Hb_004223_140 Hb_011214_110--Hb_004223_140 Hb_001677_100 Hb_001677_100 Hb_011214_110--Hb_001677_100 Hb_003929_180 Hb_003929_180 Hb_011214_110--Hb_003929_180 Hb_019654_060 Hb_019654_060 Hb_011214_110--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_011214_110--Hb_004032_210 Hb_000406_210 Hb_000406_210 Hb_005846_050--Hb_000406_210 Hb_005846_050--Hb_002552_040 Hb_001587_030 Hb_001587_030 Hb_005846_050--Hb_001587_030 Hb_008289_040 Hb_008289_040 Hb_005846_050--Hb_008289_040 Hb_065500_020 Hb_065500_020 Hb_005846_050--Hb_065500_020 Hb_001504_060 Hb_001504_060 Hb_005846_050--Hb_001504_060 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_015884_020 Hb_015884_020 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.06582 10.6074 30.898 34.25 14.4668 12.5991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.36918 6.45853 9.07462 29.6329 26.2998

CAGE analysis