Hb_001677_100

Information

Type -
Description -
Location Contig1677: 67837-75343
Sequence    

Annotation

kegg
ID rcu:RCOM_1482350
description delta 1-pyrroline-5-carboxylate synthetase, putative (EC:2.7.2.11 1.2.1.41)
nr
ID AGC51785.1
description delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
swissprot
ID O04015
description Delta-1-pyrroline-5-carboxylate synthase OS=Actinidia deliciosa PE=2 SV=1
trembl
ID V9M4V2
description Delta1-pyrroline-5-carboxylate synthase OS=Manihot esculenta GN=P5CS PE=2 SV=1
Gene Ontology
ID GO:0005737
description delta-1-pyrroline-5-carboxylate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15563: 67704-75390 , PASA_asmbl_15564: 73367-73584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_100 0.0 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
2 Hb_004297_090 0.0703826176 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
3 Hb_001434_020 0.0808686949 - - hypothetical protein RCOM_0841800 [Ricinus communis]
4 Hb_009296_020 0.0937687422 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
5 Hb_000260_400 0.1020621502 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
6 Hb_011214_110 0.105997934 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_002849_050 0.1096695643 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
8 Hb_024758_020 0.1105639255 - - acyl-CoA binding protein 3B [Vernicia fordii]
9 Hb_070624_010 0.1115972402 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
10 Hb_000661_220 0.1122277357 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
11 Hb_000365_200 0.1145047241 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
12 Hb_002284_100 0.1146552533 - - ribophorin, putative [Ricinus communis]
13 Hb_000230_530 0.1153688259 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003683_130 0.117237626 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
15 Hb_000926_060 0.117467423 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004746_010 0.1183285313 - - aldo/keto reductase, putative [Ricinus communis]
17 Hb_003680_220 0.1211401087 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
18 Hb_002392_020 0.1245923715 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
19 Hb_000649_330 0.1250453381 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
20 Hb_004218_130 0.1256895509 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_001677_100 Hb_001677_100 Hb_004297_090 Hb_004297_090 Hb_001677_100--Hb_004297_090 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_009296_020 Hb_009296_020 Hb_001677_100--Hb_009296_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050 Hb_000365_200 Hb_000365_200 Hb_004297_090--Hb_000365_200 Hb_003683_130 Hb_003683_130 Hb_004297_090--Hb_003683_130 Hb_004297_090--Hb_000260_400 Hb_004883_020 Hb_004883_020 Hb_004297_090--Hb_004883_020 Hb_004297_090--Hb_009296_020 Hb_002392_020 Hb_002392_020 Hb_001434_020--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_001434_020--Hb_007943_150 Hb_001434_020--Hb_009296_020 Hb_000358_210 Hb_000358_210 Hb_001434_020--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001434_020--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_005741_040 Hb_005741_040 Hb_000260_400--Hb_005741_040 Hb_000260_400--Hb_003683_130 Hb_002687_180 Hb_002687_180 Hb_000260_400--Hb_002687_180 Hb_002317_010 Hb_002317_010 Hb_000260_400--Hb_002317_010 Hb_001616_070 Hb_001616_070 Hb_000260_400--Hb_001616_070 Hb_000260_400--Hb_002687_200 Hb_002284_100 Hb_002284_100 Hb_011214_110--Hb_002284_100 Hb_004223_140 Hb_004223_140 Hb_011214_110--Hb_004223_140 Hb_003929_180 Hb_003929_180 Hb_011214_110--Hb_003929_180 Hb_019654_060 Hb_019654_060 Hb_011214_110--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_011214_110--Hb_004032_210 Hb_002849_050--Hb_005741_040 Hb_024758_020 Hb_024758_020 Hb_002849_050--Hb_024758_020 Hb_011188_010 Hb_011188_010 Hb_002849_050--Hb_011188_010 Hb_002849_050--Hb_009296_020 Hb_001279_020 Hb_001279_020 Hb_002849_050--Hb_001279_020 Hb_001414_010 Hb_001414_010 Hb_002849_050--Hb_001414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07361 6.27199 21.8271 16.2015 5.03018 3.70953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97679 1.59681 3.01844 16.2122 12.2041

CAGE analysis