Hb_011214_110

Information

Type -
Description -
Location Contig11214: 93278-97580
Sequence    

Annotation

kegg
ID vvi:100252226
description ALA-interacting subunit 3
nr
ID XP_012074768.1
description PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
swissprot
ID Q9LTW0
description ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1
trembl
ID B9MWW5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02040g PE=4 SV=1
Gene Ontology
ID GO:0016020
description ala-interacting subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03660: 93355-97591 , PASA_asmbl_03661: 94046-97591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_110 0.0 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
2 Hb_002284_100 0.08832164 - - ribophorin, putative [Ricinus communis]
3 Hb_004223_140 0.104969794 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_001677_100 0.105997934 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
5 Hb_003929_180 0.106656984 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
6 Hb_019654_060 0.1068570225 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
7 Hb_004032_210 0.1104444669 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002028_190 0.1121171066 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
9 Hb_000152_190 0.1160629055 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
10 Hb_001434_020 0.11880677 - - hypothetical protein RCOM_0841800 [Ricinus communis]
11 Hb_003683_130 0.1193133797 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
12 Hb_002942_230 0.1200461673 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
13 Hb_000258_220 0.1245218592 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
14 Hb_000260_400 0.1252647733 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
15 Hb_008725_270 0.125932286 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
16 Hb_003540_080 0.1262331209 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_004218_130 0.1281427258 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
18 Hb_008025_010 0.1285925444 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
19 Hb_001616_070 0.1286352905 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
20 Hb_002687_200 0.1287928025 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011214_110 Hb_011214_110 Hb_002284_100 Hb_002284_100 Hb_011214_110--Hb_002284_100 Hb_004223_140 Hb_004223_140 Hb_011214_110--Hb_004223_140 Hb_001677_100 Hb_001677_100 Hb_011214_110--Hb_001677_100 Hb_003929_180 Hb_003929_180 Hb_011214_110--Hb_003929_180 Hb_019654_060 Hb_019654_060 Hb_011214_110--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_011214_110--Hb_004032_210 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_002392_020 Hb_002392_020 Hb_002284_100--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_002284_100--Hb_000358_210 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_004223_140--Hb_003929_180 Hb_002028_190 Hb_002028_190 Hb_004223_140--Hb_002028_190 Hb_004223_140--Hb_004032_210 Hb_018845_010 Hb_018845_010 Hb_004223_140--Hb_018845_010 Hb_000012_080 Hb_000012_080 Hb_004223_140--Hb_000012_080 Hb_006351_020 Hb_006351_020 Hb_004223_140--Hb_006351_020 Hb_004297_090 Hb_004297_090 Hb_001677_100--Hb_004297_090 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_009296_020 Hb_009296_020 Hb_001677_100--Hb_009296_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_004218_130 Hb_004218_130 Hb_003929_180--Hb_004218_130 Hb_003929_180--Hb_000012_080 Hb_003929_180--Hb_006351_020 Hb_000003_030 Hb_000003_030 Hb_019654_060--Hb_000003_030 Hb_019654_060--Hb_004032_210 Hb_000581_030 Hb_000581_030 Hb_019654_060--Hb_000581_030 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010 Hb_001545_130 Hb_001545_130 Hb_004032_210--Hb_001545_130 Hb_004032_210--Hb_006351_020 Hb_004032_210--Hb_000003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47062 2.14692 9.67814 11.7042 2.72763 3.17087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.869889 1.26732 2.18826 7.24673 6.19693

CAGE analysis