Hb_008025_010

Information

Type -
Description -
Location Contig8025: 4880-11625
Sequence    

Annotation

kegg
ID rcu:RCOM_0944030
description Periplasmic beta-glucosidase precursor, putative (EC:3.2.1.21)
nr
ID XP_009417082.1
description PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
swissprot
ID A7LXU3
description Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02659 PE=1 SV=1
trembl
ID M0TZ54
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0008422
description lysosomal beta glucosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58871: 4884-11613 , PASA_asmbl_58872: 11180-11395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008025_010 0.0 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
2 Hb_005074_040 0.0914922484 - - ATP binding protein, putative [Ricinus communis]
3 Hb_003058_100 0.0933671832 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
4 Hb_014497_010 0.0957140218 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
5 Hb_003929_180 0.0993632236 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
6 Hb_002942_230 0.1042745968 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
7 Hb_003540_080 0.1049952699 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_003602_020 0.1077040893 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
9 Hb_006829_060 0.1097795725 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
10 Hb_008725_270 0.1128434512 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
11 Hb_000689_050 0.1132955866 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000049_180 0.1134301389 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
13 Hb_003680_220 0.1135772192 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
14 Hb_000008_340 0.1141000153 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
15 Hb_000139_300 0.1144552429 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
16 Hb_019654_020 0.1153174748 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
17 Hb_019654_060 0.1154876609 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
18 Hb_021409_070 0.116380034 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
19 Hb_000959_300 0.1178537539 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
20 Hb_000007_060 0.1182841437 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008025_010 Hb_008025_010 Hb_005074_040 Hb_005074_040 Hb_008025_010--Hb_005074_040 Hb_003058_100 Hb_003058_100 Hb_008025_010--Hb_003058_100 Hb_014497_010 Hb_014497_010 Hb_008025_010--Hb_014497_010 Hb_003929_180 Hb_003929_180 Hb_008025_010--Hb_003929_180 Hb_002942_230 Hb_002942_230 Hb_008025_010--Hb_002942_230 Hb_003540_080 Hb_003540_080 Hb_008025_010--Hb_003540_080 Hb_005074_040--Hb_014497_010 Hb_000139_300 Hb_000139_300 Hb_005074_040--Hb_000139_300 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_000086_210 Hb_000086_210 Hb_005074_040--Hb_000086_210 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_002837_040 Hb_002837_040 Hb_003058_100--Hb_002837_040 Hb_000645_070 Hb_000645_070 Hb_003058_100--Hb_000645_070 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010 Hb_014497_010--Hb_000689_050 Hb_000025_540 Hb_000025_540 Hb_014497_010--Hb_000025_540 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130 Hb_004032_210 Hb_004032_210 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_004223_140 Hb_004223_140 Hb_003929_180--Hb_004223_140 Hb_004218_130 Hb_004218_130 Hb_003929_180--Hb_004218_130 Hb_003929_180--Hb_000012_080 Hb_006351_020 Hb_006351_020 Hb_003929_180--Hb_006351_020 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_002942_230--Hb_003540_080 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55175 1.89672 11.1567 15.0931 2.53038 2.31996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33787 1.74837 2.11198 5.90211 11.3531

CAGE analysis