Hb_000139_300

Information

Type -
Description -
Location Contig139: 338086-339888
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19950g
description POPTRDRAFT_418616; hypothetical protein
nr
ID XP_002312709.2
description hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
swissprot
ID Q84MC0
description Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1
trembl
ID A9PEA9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19950g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10651: 338051-339912 , PASA_asmbl_10653: 339266-339525
cDNA
(Sanger)
(ID:Location)		 033_I14.ab1: 338311-339883

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_300 0.0 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
2 Hb_000086_210 0.0710507435 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_026549_070 0.0714712211 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
4 Hb_005074_040 0.0818958678 - - ATP binding protein, putative [Ricinus communis]
5 Hb_004306_110 0.0903218282 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
6 Hb_009079_050 0.0904889778 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
7 Hb_000808_150 0.0951121143 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
8 Hb_011310_040 0.1024084093 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
9 Hb_001195_660 0.1059710614 - - metalloendopeptidase, putative [Ricinus communis]
10 Hb_000935_040 0.106158043 - - Uncharacterized protein isoform 2 [Theobroma cacao]
11 Hb_000152_440 0.1064434122 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
12 Hb_002164_020 0.1075208554 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001976_030 0.1100604118 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
14 Hb_000077_310 0.1114593421 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
15 Hb_000049_160 0.1119076931 - - tyrosine decarboxylase family protein [Populus trichocarpa]
16 Hb_000749_020 0.1131908777 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
17 Hb_008025_010 0.1144552429 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
18 Hb_001369_100 0.1148340531 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
19 Hb_000049_180 0.1162286695 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
20 Hb_000012_080 0.1165720854 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_300 Hb_000139_300 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_000086_210--Hb_005074_040 Hb_000749_020 Hb_000749_020 Hb_000086_210--Hb_000749_020 Hb_005563_010 Hb_005563_010 Hb_000086_210--Hb_005563_010 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_026549_070--Hb_004306_110 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_014497_010 Hb_014497_010 Hb_005074_040--Hb_014497_010 Hb_000012_080 Hb_000012_080 Hb_005074_040--Hb_000012_080 Hb_000689_050 Hb_000689_050 Hb_005074_040--Hb_000689_050 Hb_008025_010 Hb_008025_010 Hb_005074_040--Hb_008025_010 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_000390_190 Hb_000390_190 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_009079_050--Hb_002164_020 Hb_009079_050--Hb_001195_660 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5607 18.8119 76.8887 143.679 14.2315 13.0548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4297 19.014 26.1682 25.2256 107.245

CAGE analysis