Hb_009079_050

Information

Type -
Description -
Location Contig9079: 64609-71831
Sequence    

Annotation

kegg
ID rcu:RCOM_1596210
description vacuolar proton atpase, putative (EC:3.6.3.14)
nr
ID XP_012071960.1
description PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
swissprot
ID Q8W4S4
description V-type proton ATPase subunit a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1
trembl
ID E6NU69
description V-type proton ATPase subunit a OS=Jatropha curcas GN=JHL18I08.13 PE=3 SV=1
Gene Ontology
ID GO:0000220
description v-type proton atpase subunit a3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62095: 64605-71781 , PASA_asmbl_62096: 65989-67827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009079_050 0.0 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
2 Hb_026549_070 0.0749910358 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
3 Hb_001369_100 0.0849940498 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
4 Hb_000139_300 0.0904889778 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
5 Hb_002817_040 0.0905472174 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
6 Hb_002164_020 0.1000620088 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001195_660 0.1020446117 - - metalloendopeptidase, putative [Ricinus communis]
8 Hb_003847_040 0.1127181135 - - adenosine diphosphatase, putative [Ricinus communis]
9 Hb_004306_110 0.1132314684 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_001493_060 0.1157492202 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
11 Hb_000117_030 0.1182100267 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
12 Hb_000270_660 0.1207778166 - - purine permease, putative [Ricinus communis]
13 Hb_001628_120 0.1218337367 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
14 Hb_000749_020 0.122700804 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000077_310 0.126043138 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
16 Hb_005074_040 0.1265183499 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001049_150 0.1291706106 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
18 Hb_000086_210 0.1306295474 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000959_300 0.1312850708 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
20 Hb_008025_010 0.131356723 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_009079_050 Hb_009079_050 Hb_026549_070 Hb_026549_070 Hb_009079_050--Hb_026549_070 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_000139_300 Hb_000139_300 Hb_009079_050--Hb_000139_300 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_002164_020 Hb_002164_020 Hb_009079_050--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_009079_050--Hb_001195_660 Hb_026549_070--Hb_000139_300 Hb_004306_110 Hb_004306_110 Hb_026549_070--Hb_004306_110 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_026549_070--Hb_002164_020 Hb_026549_070--Hb_001195_660 Hb_001369_100--Hb_002817_040 Hb_005563_010 Hb_005563_010 Hb_001369_100--Hb_005563_010 Hb_001628_120 Hb_001628_120 Hb_001369_100--Hb_001628_120 Hb_000096_190 Hb_000096_190 Hb_001369_100--Hb_000096_190 Hb_001369_100--Hb_000139_300 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_004306_110 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_000749_020 Hb_000749_020 Hb_002817_040--Hb_000749_020 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_000612_090 Hb_000612_090 Hb_002817_040--Hb_000612_090 Hb_002028_180 Hb_002028_180 Hb_002817_040--Hb_002028_180 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_001195_660--Hb_003847_040 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_001195_660--Hb_000139_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35964 1.90333 7.48827 13.3585 2.84819 1.29069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43013 1.66649 1.71954 2.52299 13.8193

CAGE analysis