Hb_001195_660

Information

Type -
Description -
Location Contig1195: 474306-480442
Sequence    

Annotation

kegg
ID rcu:RCOM_1593600
description metalloendopeptidase, putative (EC:3.4.24.36)
nr
ID XP_002510341.1
description metalloendopeptidase, putative [Ricinus communis]
swissprot
ID Q29AK2
description Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura GN=GA17800 PE=3 SV=1
trembl
ID B9R7P8
description Metalloendopeptidase, putative OS=Ricinus communis GN=RCOM_1593600 PE=4 SV=1
Gene Ontology
ID GO:0016020
description leishmanolysin-like peptidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05868: 473634-474654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_660 0.0 - - metalloendopeptidase, putative [Ricinus communis]
2 Hb_003847_040 0.0964406301 - - adenosine diphosphatase, putative [Ricinus communis]
3 Hb_026549_070 0.0970000508 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
4 Hb_000283_140 0.1018937679 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_009079_050 0.1020446117 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
6 Hb_003582_090 0.1045095862 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
7 Hb_000139_300 0.1059710614 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
8 Hb_012807_150 0.1066982009 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
9 Hb_001677_040 0.1083702999 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
10 Hb_001369_010 0.1098722292 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
11 Hb_000140_060 0.1123470725 - - 50S ribosomal protein L5, putative [Ricinus communis]
12 Hb_005074_040 0.1133674241 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002817_040 0.1163758283 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
14 Hb_000749_020 0.1178232071 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
15 Hb_003006_090 0.1183702931 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
16 Hb_002675_080 0.1196191172 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
17 Hb_003462_040 0.1198727123 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_006120_060 0.1210078732 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
19 Hb_000445_370 0.1219878731 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
20 Hb_014497_010 0.123129329 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_660 Hb_001195_660 Hb_003847_040 Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_003847_040--Hb_026549_070 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_026549_070--Hb_000139_300 Hb_004306_110 Hb_004306_110 Hb_026549_070--Hb_004306_110 Hb_026549_070--Hb_009079_050 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_009079_050--Hb_000139_300 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_009079_050--Hb_002164_020 Hb_000445_370 Hb_000445_370 Hb_003582_090--Hb_000445_370 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003582_090--Hb_003847_040 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_004306_110 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.456965 1.90448 4.82606 7.38267 0.902149 0.613385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.710386 0.455003 1.16625 1.32615 6.97303

CAGE analysis