Hb_026549_070

Information

Type -
Description -
Location Contig26549: 56915-63081
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08130g
description POPTRDRAFT_735401; hypothetical protein
nr
ID XP_012074855.1
description PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
swissprot
ID Q8VZC0
description UDP-glucuronic acid decarboxylase 1 OS=Arabidopsis thaliana GN=UXS1 PE=1 SV=1
trembl
ID A0A067KKP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09011 PE=4 SV=1
Gene Ontology
ID GO:0003824
description udp-glucuronate decarboxylase protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27745: 56907-62925 , PASA_asmbl_27746: 58815-58918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026549_070 0.0 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
2 Hb_000139_300 0.0714712211 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
3 Hb_004306_110 0.0745207072 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
4 Hb_009079_050 0.0749910358 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
5 Hb_003847_040 0.0892505844 - - adenosine diphosphatase, putative [Ricinus communis]
6 Hb_002164_020 0.0962766072 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001195_660 0.0970000508 - - metalloendopeptidase, putative [Ricinus communis]
8 Hb_000000_310 0.097362583 - - metalloendopeptidase, putative [Ricinus communis]
9 Hb_000684_390 0.102239046 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
10 Hb_000107_250 0.1026659595 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
11 Hb_001969_140 0.1078310153 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
12 Hb_000959_300 0.111827875 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
13 Hb_001049_150 0.1125436707 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
14 Hb_005074_040 0.1128739194 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001628_120 0.1133491068 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
16 Hb_116702_010 0.1137854294 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
17 Hb_014497_010 0.1138951124 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
18 Hb_000920_310 0.1141536371 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_002097_100 0.1154244078 - - protein with unknown function [Ricinus communis]
20 Hb_000270_660 0.1157844159 - - purine permease, putative [Ricinus communis]

Gene co-expression network

sample Hb_026549_070 Hb_026549_070 Hb_000139_300 Hb_000139_300 Hb_026549_070--Hb_000139_300 Hb_004306_110 Hb_004306_110 Hb_026549_070--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_004306_110 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_000390_190 Hb_000390_190 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_009079_050--Hb_002164_020 Hb_009079_050--Hb_001195_660 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_003847_040--Hb_001195_660 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_001195_660--Hb_000139_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1652 9.70512 25.4675 45.371 7.31135 5.95026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77211 5.77181 8.5311 9.06098 42.46

CAGE analysis