Hb_000062_400

Information

Type -
Description -
Location Contig62: 306564-312951
Sequence    

Annotation

kegg
ID rcu:RCOM_1081860
description hypothetical protein
nr
ID XP_002514993.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51460: 306311-306625 , PASA_asmbl_51462: 306976-310214 , PASA_asmbl_51465: 311310-312912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004306_110 0.0890785866 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
3 Hb_000390_190 0.1010769542 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000684_390 0.1091875169 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
5 Hb_004735_020 0.1133456134 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
6 Hb_021495_020 0.1135042629 - - chitinase, putative [Ricinus communis]
7 Hb_001049_150 0.1151216205 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
8 Hb_000920_310 0.1157422524 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_026549_070 0.1164224844 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
10 Hb_000000_310 0.1168589936 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_003682_070 0.1191282999 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
12 Hb_000815_230 0.1196417143 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001628_120 0.1262212008 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
14 Hb_000521_090 0.1267857546 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
15 Hb_009252_010 0.128554987 - - PREDICTED: kinesin light chain [Jatropha curcas]
16 Hb_002164_020 0.1292330562 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001882_020 0.1298598819 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
18 Hb_003746_010 0.1302155059 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000107_250 0.1311505735 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
20 Hb_001976_030 0.1327300939 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_400 Hb_000062_400 Hb_004306_110 Hb_004306_110 Hb_000062_400--Hb_004306_110 Hb_000390_190 Hb_000390_190 Hb_000062_400--Hb_000390_190 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_000062_400--Hb_004735_020 Hb_021495_020 Hb_021495_020 Hb_000062_400--Hb_021495_020 Hb_001049_150 Hb_001049_150 Hb_000062_400--Hb_001049_150 Hb_026549_070 Hb_026549_070 Hb_004306_110--Hb_026549_070 Hb_000139_300 Hb_000139_300 Hb_004306_110--Hb_000139_300 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_000390_190--Hb_001976_030 Hb_000390_190--Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_000000_310 Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_003682_070 Hb_003682_070 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_001491_030 Hb_001491_030 Hb_021495_020--Hb_001491_030 Hb_009020_040 Hb_009020_040 Hb_021495_020--Hb_009020_040 Hb_011926_040 Hb_011926_040 Hb_021495_020--Hb_011926_040 Hb_003746_010 Hb_003746_010 Hb_021495_020--Hb_003746_010 Hb_011224_100 Hb_011224_100 Hb_021495_020--Hb_011224_100 Hb_000665_190 Hb_000665_190 Hb_001049_150--Hb_000665_190 Hb_001623_080 Hb_001623_080 Hb_001049_150--Hb_001623_080 Hb_001049_150--Hb_011926_040 Hb_001049_150--Hb_026549_070 Hb_001976_060 Hb_001976_060 Hb_001049_150--Hb_001976_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8725 2.53721 6.00947 12.7408 2.36965 2.80846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11995 2.08922 3.28101 1.55004 16.4358

CAGE analysis