Hb_021495_020

Information

Type -
Description -
Location Contig21495: 9522-13153
Sequence    

Annotation

kegg
ID rcu:RCOM_1378210
description chitinase, putative (EC:3.2.1.14)
nr
ID XP_002515664.1
description chitinase, putative [Ricinus communis]
swissprot
ID Q9MA41
description Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=1
trembl
ID B9RPJ5
description Chitinase, putative OS=Ricinus communis GN=RCOM_1378210 PE=4 SV=1
Gene Ontology
ID GO:0005794
description chitinase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22162: 8082-13012
cDNA
(Sanger)
(ID:Location)		 011_G21.ab1: 10632-13012 , 020_M03.ab1: 10562-12963 , 022_A22.ab1: 10574-12974 , 022_K19.ab1: 12731-12959 , 023_C24.ab1: 10579-13005 , 023_H03.ab1: 10558-12986 , 024_G10.ab1: 10652-12982 , 024_G19.ab1: 10702-13012 , 030_D17.ab1: 10631-12999 , 033_I01.ab1: 10541-12993 , 041_D13.ab1: 10708-13006 , 048_C13.ab1: 10522-12963 , 050_P09.ab1: 10715-13012 , 052_C13.ab1: 10568-13012

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021495_020 0.0 - - chitinase, putative [Ricinus communis]
2 Hb_000062_400 0.1135042629 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001491_030 0.1173525807 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
4 Hb_009020_040 0.1207744529 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
5 Hb_011926_040 0.1221469626 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_003746_010 0.125809542 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011224_100 0.1260684758 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000172_350 0.1273156993 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
9 Hb_000331_490 0.12929161 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
10 Hb_000230_290 0.1301326619 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000011_220 0.1311773096 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
12 Hb_000613_010 0.1339319084 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
13 Hb_000388_150 0.1393075896 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
14 Hb_003994_300 0.1402662267 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000920_310 0.140577293 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_000368_090 0.140823717 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
17 Hb_001882_020 0.1414452189 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
18 Hb_001916_090 0.1426232156 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
19 Hb_000327_110 0.1426704252 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
20 Hb_002289_060 0.144406757 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021495_020 Hb_021495_020 Hb_000062_400 Hb_000062_400 Hb_021495_020--Hb_000062_400 Hb_001491_030 Hb_001491_030 Hb_021495_020--Hb_001491_030 Hb_009020_040 Hb_009020_040 Hb_021495_020--Hb_009020_040 Hb_011926_040 Hb_011926_040 Hb_021495_020--Hb_011926_040 Hb_003746_010 Hb_003746_010 Hb_021495_020--Hb_003746_010 Hb_011224_100 Hb_011224_100 Hb_021495_020--Hb_011224_100 Hb_004306_110 Hb_004306_110 Hb_000062_400--Hb_004306_110 Hb_000390_190 Hb_000390_190 Hb_000062_400--Hb_000390_190 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_000062_400--Hb_004735_020 Hb_001049_150 Hb_001049_150 Hb_000062_400--Hb_001049_150 Hb_007765_040 Hb_007765_040 Hb_001491_030--Hb_007765_040 Hb_000056_130 Hb_000056_130 Hb_001491_030--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_001491_030--Hb_002226_080 Hb_000058_110 Hb_000058_110 Hb_001491_030--Hb_000058_110 Hb_001675_190 Hb_001675_190 Hb_001491_030--Hb_001675_190 Hb_000359_310 Hb_000359_310 Hb_001491_030--Hb_000359_310 Hb_001220_050 Hb_001220_050 Hb_009020_040--Hb_001220_050 Hb_000200_350 Hb_000200_350 Hb_009020_040--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_009020_040--Hb_000388_150 Hb_005250_010 Hb_005250_010 Hb_009020_040--Hb_005250_010 Hb_002232_390 Hb_002232_390 Hb_009020_040--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_009020_040--Hb_003475_020 Hb_009913_040 Hb_009913_040 Hb_011926_040--Hb_009913_040 Hb_000399_060 Hb_000399_060 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_000173_060 Hb_000173_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_011606_020 Hb_011606_020 Hb_011224_100--Hb_011606_020 Hb_002174_040 Hb_002174_040 Hb_011224_100--Hb_002174_040 Hb_000116_130 Hb_000116_130 Hb_011224_100--Hb_000116_130 Hb_043792_040 Hb_043792_040 Hb_011224_100--Hb_043792_040 Hb_012573_050 Hb_012573_050 Hb_011224_100--Hb_012573_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.461 79.4419 197.621 518.266 170.679 208.47
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.043 96.319 243.23 91.7367 665.271

CAGE analysis