Hb_000390_190

Information

Type -
Description -
Location Contig390: 214118-218025
Sequence    

Annotation

kegg
ID rcu:RCOM_1327430
description ATP binding protein, putative
nr
ID XP_002520069.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LFE4
description WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1
trembl
ID B9S250
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1327430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39108: 214146-218348 , PASA_asmbl_39109: 214160-218348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_190 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_004306_110 0.098254192 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
3 Hb_000062_400 0.1010769542 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000860_060 0.108661945 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
5 Hb_000189_480 0.1116357938 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
6 Hb_001976_030 0.1121217311 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
7 Hb_000920_310 0.1157586353 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_042083_040 0.1172544898 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000140_340 0.1187823778 - - PREDICTED: protein ABIL1 [Jatropha curcas]
10 Hb_000000_310 0.1188484314 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_073973_120 0.1211762462 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001628_120 0.1241824756 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
13 Hb_000684_390 0.1261047593 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
14 Hb_026549_070 0.1269593515 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
15 Hb_174865_040 0.1288370966 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
16 Hb_001049_150 0.1304035262 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
17 Hb_000139_300 0.1304499235 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
18 Hb_000320_340 0.1305088336 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
19 Hb_011926_040 0.1323032587 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_000120_990 0.1331740476 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000390_190 Hb_000390_190 Hb_004306_110 Hb_004306_110 Hb_000390_190--Hb_004306_110 Hb_000062_400 Hb_000062_400 Hb_000390_190--Hb_000062_400 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_001976_030 Hb_001976_030 Hb_000390_190--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_000390_190--Hb_000920_310 Hb_026549_070 Hb_026549_070 Hb_004306_110--Hb_026549_070 Hb_004306_110--Hb_000062_400 Hb_000139_300 Hb_000139_300 Hb_004306_110--Hb_000139_300 Hb_004306_110--Hb_001976_030 Hb_004306_110--Hb_000920_310 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_000062_400--Hb_004735_020 Hb_021495_020 Hb_021495_020 Hb_000062_400--Hb_021495_020 Hb_001049_150 Hb_001049_150 Hb_000062_400--Hb_001049_150 Hb_002955_020 Hb_002955_020 Hb_000860_060--Hb_002955_020 Hb_000860_060--Hb_000920_310 Hb_000008_340 Hb_000008_340 Hb_000860_060--Hb_000008_340 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_001504_030 Hb_001504_030 Hb_000189_480--Hb_001504_030 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000189_480--Hb_000320_340 Hb_000140_340 Hb_000140_340 Hb_000189_480--Hb_000140_340 Hb_001157_230 Hb_001157_230 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_000049_180 Hb_000049_180 Hb_001976_030--Hb_000049_180 Hb_001628_120 Hb_001628_120 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000920_310--Hb_000684_390 Hb_000920_310--Hb_002955_020 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_000000_310 Hb_000000_310 Hb_000920_310--Hb_000000_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3128 11.1551 35.6117 59.6069 7.17125 11.8122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3997 11.3811 8.49507 7.36702 58.2796

CAGE analysis