Hb_001049_150

Information

Type -
Description -
Location Contig1049: 235131-239429
Sequence    

Annotation

kegg
ID rcu:RCOM_1690730
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_012086777.1
description PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
swissprot
ID Q94F27
description Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1
trembl
ID A0A067JMY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20497 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01676: 236419-239456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_150 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
2 Hb_000665_190 0.0805803649 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001623_080 0.0875525738 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_011926_040 0.1095974063 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_026549_070 0.1125436707 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
6 Hb_000062_400 0.1151216205 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001976_060 0.1157611602 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
8 Hb_003994_300 0.1164927687 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003746_010 0.117276928 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004306_110 0.1181706047 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
11 Hb_002164_020 0.1223046777 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001969_140 0.1247036037 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
13 Hb_012339_010 0.1262793566 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027445_030 0.1270627119 - - F-box/LRR-repeat protein, putative [Ricinus communis]
15 Hb_002129_020 0.1285824829 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
16 Hb_009079_050 0.1291706106 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
17 Hb_009913_040 0.1297351152 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
18 Hb_000399_060 0.1303682948 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
19 Hb_000390_190 0.1304035262 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000000_310 0.1308093193 - - metalloendopeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001049_150 Hb_001049_150 Hb_000665_190 Hb_000665_190 Hb_001049_150--Hb_000665_190 Hb_001623_080 Hb_001623_080 Hb_001049_150--Hb_001623_080 Hb_011926_040 Hb_011926_040 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_001049_150--Hb_000062_400 Hb_001976_060 Hb_001976_060 Hb_001049_150--Hb_001976_060 Hb_003994_300 Hb_003994_300 Hb_000665_190--Hb_003994_300 Hb_027445_030 Hb_027445_030 Hb_000665_190--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_000665_190--Hb_011926_040 Hb_001623_080--Hb_001976_060 Hb_004899_340 Hb_004899_340 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010 Hb_009913_040 Hb_009913_040 Hb_011926_040--Hb_009913_040 Hb_000399_060 Hb_000399_060 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_000173_060 Hb_000173_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_000139_300 Hb_000139_300 Hb_026549_070--Hb_000139_300 Hb_004306_110 Hb_004306_110 Hb_026549_070--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_026549_070--Hb_009079_050 Hb_003847_040 Hb_003847_040 Hb_026549_070--Hb_003847_040 Hb_002164_020 Hb_002164_020 Hb_026549_070--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_026549_070--Hb_001195_660 Hb_000062_400--Hb_004306_110 Hb_000390_190 Hb_000390_190 Hb_000062_400--Hb_000390_190 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_000062_400--Hb_004735_020 Hb_021495_020 Hb_021495_020 Hb_000062_400--Hb_021495_020 Hb_001675_050 Hb_001675_050 Hb_001976_060--Hb_001675_050 Hb_001976_060--Hb_000062_400 Hb_000117_030 Hb_000117_030 Hb_001976_060--Hb_000117_030 Hb_001976_060--Hb_004899_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41796 1.21075 2.86271 7.46174 1.90774 1.28686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.966679 0.651722 1.20543 0.81393 5.36139

CAGE analysis