Hb_004899_340

Information

Type -
Description -
Location Contig4899: 278520-285459
Sequence    

Annotation

kegg
ID rcu:RCOM_0710990
description polygalacturonase, putative (EC:3.2.1.15)
nr
ID XP_012077081.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067KQ33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07510 PE=3 SV=1
Gene Ontology
ID GO:0004650
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45225: 281607-282050 , PASA_asmbl_45226: 278528-285435 , PASA_asmbl_45227: 282502-282923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_340 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_011021_010 0.0761820774 - - kinase, putative [Ricinus communis]
3 Hb_001969_140 0.1076814434 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
4 Hb_001623_080 0.1164421492 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000959_300 0.1182026134 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
6 Hb_009838_020 0.1304492328 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
7 Hb_014361_090 0.1336418893 - - acyl-CoA binding protein 3A [Vernicia fordii]
8 Hb_005941_030 0.136009045 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
9 Hb_000071_160 0.1395722487 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
10 Hb_001493_060 0.140460801 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
11 Hb_001049_150 0.1409195351 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
12 Hb_003680_030 0.1419360088 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
13 Hb_000347_190 0.1429075601 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
14 Hb_000167_040 0.1440567248 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
15 Hb_020586_010 0.1440790444 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
16 Hb_007192_020 0.1511850354 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
17 Hb_011828_010 0.1512907099 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
18 Hb_002488_010 0.1516059273 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_001976_060 0.1525934982 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
20 Hb_001195_310 0.1527828889 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004899_340 Hb_004899_340 Hb_011021_010 Hb_011021_010 Hb_004899_340--Hb_011021_010 Hb_001969_140 Hb_001969_140 Hb_004899_340--Hb_001969_140 Hb_001623_080 Hb_001623_080 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_009838_020 Hb_009838_020 Hb_004899_340--Hb_009838_020 Hb_014361_090 Hb_014361_090 Hb_004899_340--Hb_014361_090 Hb_011021_010--Hb_014361_090 Hb_011021_010--Hb_001623_080 Hb_011021_010--Hb_001969_140 Hb_001493_060 Hb_001493_060 Hb_011021_010--Hb_001493_060 Hb_000071_160 Hb_000071_160 Hb_011021_010--Hb_000071_160 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_001969_140--Hb_000959_300 Hb_001049_150 Hb_001049_150 Hb_001623_080--Hb_001049_150 Hb_001976_060 Hb_001976_060 Hb_001623_080--Hb_001976_060 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_002488_010 Hb_002488_010 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000959_300--Hb_000167_040 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_001221_190 Hb_001221_190 Hb_009838_020--Hb_001221_190 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_011828_010 Hb_011828_010 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_014361_090--Hb_005941_030 Hb_014361_090--Hb_000071_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73529 9.82367 23.5773 65.9094 15.5314 13.3518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94 1.39115 3.94864 9.43906 42.9381

CAGE analysis