Hb_030565_050

Information

Type -
Description -
Location Contig30565: 42666-44036
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32730g
description POPTRDRAFT_815626; UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein
nr
ID XP_002298679.1
description UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
swissprot
ID Q9LIS3
description UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1
trembl
ID A9P9K8
description UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein OS=Populus trichocarpa GN=POPTR_0001s32730g PE=2 SV=1
Gene Ontology
ID GO:0005768
description udp-glucuronate 4-epimerase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32269: 42207-44171
cDNA
(Sanger)
(ID:Location)		 014_A04.ab1: 43414-44171 , 018_O14.ab1: 43670-44169

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_050 0.0 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
2 Hb_014361_090 0.115317864 - - acyl-CoA binding protein 3A [Vernicia fordii]
3 Hb_004449_090 0.1159595713 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
4 Hb_000684_220 0.1301496007 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_005539_140 0.1357807315 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
6 Hb_000176_080 0.1367556323 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
7 Hb_000603_020 0.1387355341 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
8 Hb_003086_030 0.1390840449 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_002686_130 0.1404596336 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
10 Hb_001195_090 0.1424253421 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_000330_020 0.1440697954 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
12 Hb_005941_030 0.1482330159 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
13 Hb_000030_130 0.1484061324 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_011828_010 0.1507239299 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
15 Hb_003623_040 0.1558965331 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
16 Hb_000805_140 0.1608485892 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
17 Hb_006570_090 0.1621822951 - - tubulin beta chain, putative [Ricinus communis]
18 Hb_000071_160 0.1624743142 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
19 Hb_072398_010 0.1626054527 - - pepsin A, putative [Ricinus communis]
20 Hb_003006_090 0.1639842405 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_030565_050 Hb_030565_050 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_011828_010 Hb_011828_010 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340 Hb_160405_010 Hb_160405_010 Hb_004449_090--Hb_160405_010 Hb_000028_580 Hb_000028_580 Hb_004449_090--Hb_000028_580 Hb_000300_230 Hb_000300_230 Hb_004449_090--Hb_000300_230 Hb_002289_150 Hb_002289_150 Hb_004449_090--Hb_002289_150 Hb_004449_090--Hb_011828_010 Hb_002774_120 Hb_002774_120 Hb_000684_220--Hb_002774_120 Hb_000246_130 Hb_000246_130 Hb_000684_220--Hb_000246_130 Hb_000330_020 Hb_000330_020 Hb_000684_220--Hb_000330_020 Hb_000684_220--Hb_000603_020 Hb_000236_160 Hb_000236_160 Hb_000684_220--Hb_000236_160 Hb_005489_150 Hb_005489_150 Hb_005539_140--Hb_005489_150 Hb_000479_060 Hb_000479_060 Hb_005539_140--Hb_000479_060 Hb_000455_070 Hb_000455_070 Hb_005539_140--Hb_000455_070 Hb_000030_130 Hb_000030_130 Hb_005539_140--Hb_000030_130 Hb_000109_190 Hb_000109_190 Hb_005539_140--Hb_000109_190 Hb_003623_040 Hb_003623_040 Hb_000176_080--Hb_003623_040 Hb_005183_130 Hb_005183_130 Hb_000176_080--Hb_005183_130 Hb_000108_180 Hb_000108_180 Hb_000176_080--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_000176_080--Hb_025645_020 Hb_000176_080--Hb_000030_130 Hb_000251_120 Hb_000251_120 Hb_000176_080--Hb_000251_120 Hb_000271_220 Hb_000271_220 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.19666 19.9078 13.6777 83.9212 6.07157 6.18691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14896 1.14522 2.14379 7.3454 36.5903

CAGE analysis