Hb_002559_030

Information

Type -
Description -
Location Contig2559: 24460-26151
Sequence    

Annotation

kegg
ID rcu:RCOM_1594750
description oxidoreductase, putative
nr
ID XP_002510405.1
description oxidoreductase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7W2
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_1594750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26667: 25083-25450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002559_030 0.0 - - oxidoreductase, putative [Ricinus communis]
2 Hb_014361_090 0.1240366733 - - acyl-CoA binding protein 3A [Vernicia fordii]
3 Hb_003006_090 0.1313667652 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
4 Hb_011828_010 0.1437139656 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
5 Hb_000056_110 0.1448585993 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
6 Hb_000071_160 0.156261079 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_002685_220 0.1578258367 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
8 Hb_000473_120 0.1581067199 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
9 Hb_072398_010 0.1632646595 - - pepsin A, putative [Ricinus communis]
10 Hb_001195_380 0.1637461703 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
11 Hb_002110_090 0.1642848086 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
12 Hb_001140_170 0.1643012442 - - PREDICTED: remorin [Jatropha curcas]
13 Hb_000309_110 0.1643398778 - - PREDICTED: kinesin light chain [Jatropha curcas]
14 Hb_000251_050 0.1650623643 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
15 Hb_000579_030 0.1654027114 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
16 Hb_000347_190 0.1687847267 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
17 Hb_001195_250 0.1695181336 - - lrr receptor protein kinase, putative [Ricinus communis]
18 Hb_000042_060 0.1709820172 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
19 Hb_030565_050 0.171235268 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
20 Hb_003006_080 0.1719730815 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002559_030 Hb_002559_030 Hb_014361_090 Hb_014361_090 Hb_002559_030--Hb_014361_090 Hb_003006_090 Hb_003006_090 Hb_002559_030--Hb_003006_090 Hb_011828_010 Hb_011828_010 Hb_002559_030--Hb_011828_010 Hb_000056_110 Hb_000056_110 Hb_002559_030--Hb_000056_110 Hb_000071_160 Hb_000071_160 Hb_002559_030--Hb_000071_160 Hb_002685_220 Hb_002685_220 Hb_002559_030--Hb_002685_220 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_014361_090--Hb_011828_010 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003462_040 Hb_003462_040 Hb_003006_090--Hb_003462_040 Hb_001195_660 Hb_001195_660 Hb_003006_090--Hb_001195_660 Hb_001677_040 Hb_001677_040 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_011828_010--Hb_000271_220 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_001252_030 Hb_001252_030 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_000056_110--Hb_001677_040 Hb_000071_160--Hb_005941_030 Hb_000071_160--Hb_011828_010 Hb_000071_160--Hb_000271_220 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_002097_080 Hb_002097_080 Hb_002685_220--Hb_002097_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002495_030 Hb_002495_030 Hb_002685_220--Hb_002495_030 Hb_001976_020 Hb_001976_020 Hb_002685_220--Hb_001976_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06677 5.55454 2.69405 11.1269 1.25098 2.12647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.381054 0.278389 0.404064 1.87764 12.5579

CAGE analysis