Hb_000107_550

Information

Type -
Description -
Location Contig107: 396612-421987
Sequence    

Annotation

kegg
ID rcu:RCOM_1386130
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_012073160.1
description PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
swissprot
ID Q8LPQ8
description Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=1 SV=2
trembl
ID A0A067LQ08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10737 PE=3 SV=1
Gene Ontology
ID GO:0016021
description monosaccharide-sensing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02202: 396519-421827 , PASA_asmbl_02203: 396519-421827 , PASA_asmbl_02205: 398256-400082 , PASA_asmbl_02206: 397100-397395 , PASA_asmbl_02207: 396918-397523
cDNA
(Sanger)
(ID:Location)		 027_D13.ab1: 396860-397747

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_550 0.0 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
2 Hb_002740_100 0.1171267609 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_002685_220 0.1178350243 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
4 Hb_002110_090 0.1279216838 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
5 Hb_003092_050 0.1289945121 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
6 Hb_000181_230 0.132339205 - - copper ion binding protein, putative [Ricinus communis]
7 Hb_003006_080 0.1349946115 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_002099_060 0.1402819993 - - Protein AFR, putative [Ricinus communis]
9 Hb_003371_190 0.1409861575 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
10 Hb_001894_010 0.1426717986 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
11 Hb_005724_040 0.1433436312 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
12 Hb_003177_090 0.143637165 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
13 Hb_098795_030 0.143655779 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
14 Hb_001486_100 0.1441568198 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_002495_030 0.1452389238 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
16 Hb_030312_030 0.145705897 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
17 Hb_000445_370 0.1459886328 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
18 Hb_000438_020 0.1480464258 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
19 Hb_002097_080 0.1487830204 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
20 Hb_006040_170 0.1498699094 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]

Gene co-expression network

sample Hb_000107_550 Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_000107_550--Hb_002740_100 Hb_002685_220 Hb_002685_220 Hb_000107_550--Hb_002685_220 Hb_002110_090 Hb_002110_090 Hb_000107_550--Hb_002110_090 Hb_003092_050 Hb_003092_050 Hb_000107_550--Hb_003092_050 Hb_000181_230 Hb_000181_230 Hb_000107_550--Hb_000181_230 Hb_003006_080 Hb_003006_080 Hb_000107_550--Hb_003006_080 Hb_005724_040 Hb_005724_040 Hb_002740_100--Hb_005724_040 Hb_001486_100 Hb_001486_100 Hb_002740_100--Hb_001486_100 Hb_002740_100--Hb_000181_230 Hb_006414_010 Hb_006414_010 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_000326_080 Hb_000326_080 Hb_002740_100--Hb_000326_080 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_002097_080 Hb_002097_080 Hb_002685_220--Hb_002097_080 Hb_002685_220--Hb_002740_100 Hb_002495_030 Hb_002495_030 Hb_002685_220--Hb_002495_030 Hb_001976_020 Hb_001976_020 Hb_002685_220--Hb_001976_020 Hb_001269_520 Hb_001269_520 Hb_002110_090--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_002110_090--Hb_000251_050 Hb_003177_090 Hb_003177_090 Hb_002110_090--Hb_003177_090 Hb_002110_090--Hb_000181_230 Hb_002099_060 Hb_002099_060 Hb_002110_090--Hb_002099_060 Hb_001894_010 Hb_001894_010 Hb_003092_050--Hb_001894_010 Hb_000215_250 Hb_000215_250 Hb_003092_050--Hb_000215_250 Hb_000139_510 Hb_000139_510 Hb_003092_050--Hb_000139_510 Hb_005181_060 Hb_005181_060 Hb_003092_050--Hb_005181_060 Hb_013848_030 Hb_013848_030 Hb_003092_050--Hb_013848_030 Hb_000181_230--Hb_005724_040 Hb_007483_120 Hb_007483_120 Hb_000181_230--Hb_007483_120 Hb_000181_230--Hb_002099_060 Hb_002344_080 Hb_002344_080 Hb_000181_230--Hb_002344_080 Hb_002685_160 Hb_002685_160 Hb_000181_230--Hb_002685_160 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_000473_120 Hb_000473_120 Hb_003006_080--Hb_000473_120 Hb_019654_110 Hb_019654_110 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.745926 13.044 11.3588 29.2258 4.06879 2.25595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.804852 0.484826 1.14253 17.4159 27.3941

CAGE analysis