Hb_002110_090

Information

Type -
Description -
Location Contig2110: 103704-107493
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17580g
description POPTRDRAFT_831460; F-box family protein
nr
ID XP_012067953.1
description PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
swissprot
ID Q9LTX2
description Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=2 SV=1
trembl
ID A0A067LAB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15857 PE=4 SV=1
Gene Ontology
ID GO:0000822
description transport inhibitor response 1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21854: 103800-107491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_090 0.0 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
2 Hb_001269_520 0.1163964496 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
3 Hb_000251_050 0.1205470036 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
4 Hb_003177_090 0.1224983209 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
5 Hb_000107_550 0.1279216838 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
6 Hb_000181_230 0.1290075382 - - copper ion binding protein, putative [Ricinus communis]
7 Hb_002099_060 0.132041906 - - Protein AFR, putative [Ricinus communis]
8 Hb_000917_210 0.1355091897 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000594_130 0.1378861316 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_049293_010 0.1380804013 - - kinase, putative [Ricinus communis]
11 Hb_002685_220 0.1386648574 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
12 Hb_001195_370 0.1392329158 - - -
13 Hb_000418_150 0.1398453066 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000714_120 0.1415660987 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
15 Hb_006040_170 0.1424452001 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
16 Hb_001195_250 0.1434994229 - - lrr receptor protein kinase, putative [Ricinus communis]
17 Hb_000445_370 0.1466659824 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
18 Hb_000333_030 0.1482262354 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_025045_010 0.1510769999 - - catalytic, putative [Ricinus communis]
20 Hb_000757_020 0.1519606979 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_090 Hb_002110_090 Hb_001269_520 Hb_001269_520 Hb_002110_090--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_002110_090--Hb_000251_050 Hb_003177_090 Hb_003177_090 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_000181_230 Hb_000181_230 Hb_002110_090--Hb_000181_230 Hb_002099_060 Hb_002099_060 Hb_002110_090--Hb_002099_060 Hb_001269_520--Hb_000251_050 Hb_000417_020 Hb_000417_020 Hb_001269_520--Hb_000417_020 Hb_001538_020 Hb_001538_020 Hb_001269_520--Hb_001538_020 Hb_001195_250 Hb_001195_250 Hb_001269_520--Hb_001195_250 Hb_000270_710 Hb_000270_710 Hb_001269_520--Hb_000270_710 Hb_049293_010 Hb_049293_010 Hb_000251_050--Hb_049293_010 Hb_000251_050--Hb_002099_060 Hb_000251_050--Hb_001195_250 Hb_000418_150 Hb_000418_150 Hb_000251_050--Hb_000418_150 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_003177_090--Hb_000418_150 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_002740_100 Hb_002740_100 Hb_000107_550--Hb_002740_100 Hb_002685_220 Hb_002685_220 Hb_000107_550--Hb_002685_220 Hb_003092_050 Hb_003092_050 Hb_000107_550--Hb_003092_050 Hb_000107_550--Hb_000181_230 Hb_003006_080 Hb_003006_080 Hb_000107_550--Hb_003006_080 Hb_005724_040 Hb_005724_040 Hb_000181_230--Hb_005724_040 Hb_007483_120 Hb_007483_120 Hb_000181_230--Hb_007483_120 Hb_000181_230--Hb_002740_100 Hb_000181_230--Hb_002099_060 Hb_000181_230--Hb_002344_080 Hb_002685_160 Hb_002685_160 Hb_000181_230--Hb_002685_160 Hb_000438_020 Hb_000438_020 Hb_002099_060--Hb_000438_020 Hb_029748_020 Hb_029748_020 Hb_002099_060--Hb_029748_020 Hb_002099_060--Hb_005724_040 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_002099_060--Hb_000418_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69459 12.0739 12.4561 22.1504 2.96879 4.28422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216797 0.319885 0.347112 12.5349 35.2118

CAGE analysis