Hb_001195_250

Information

Type -
Description -
Location Contig1195: 141679-146226
Sequence    

Annotation

kegg
ID rcu:RCOM_1594390
description lrr receptor protein kinase, putative (EC:1.3.1.74)
nr
ID XP_002510390.1
description lrr receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGK4
description Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=2 SV=1
trembl
ID B9R7U7
description Lrr receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1594390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at2g16250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05801: 141572-141735 , PASA_asmbl_05802: 141951-142708 , PASA_asmbl_05803: 142709-142970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_250 0.0 - - lrr receptor protein kinase, putative [Ricinus communis]
2 Hb_000103_410 0.1128014795 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
3 Hb_000753_150 0.1159652363 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
4 Hb_003177_090 0.1172717155 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
5 Hb_001269_520 0.1261897451 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
6 Hb_006717_010 0.1275038665 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
7 Hb_000251_050 0.1310132364 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
8 Hb_025045_010 0.1331020503 - - catalytic, putative [Ricinus communis]
9 Hb_002110_090 0.1434994229 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
10 Hb_000215_230 0.1440917705 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
11 Hb_003687_010 0.1475259615 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
12 Hb_001689_030 0.1480271355 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
13 Hb_167775_010 0.1483535961 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_002344_080 0.1484865022 - - PREDICTED: protein YLS2-like [Populus euphratica]
15 Hb_006040_170 0.1502097007 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
16 Hb_000237_160 0.1509092636 - - BEL1-like homeodomain protein 1 [Morus notabilis]
17 Hb_002099_060 0.152599899 - - Protein AFR, putative [Ricinus communis]
18 Hb_031862_120 0.1527203727 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
19 Hb_143871_010 0.1529140969 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_001486_100 0.1535237237 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_250 Hb_001195_250 Hb_000103_410 Hb_000103_410 Hb_001195_250--Hb_000103_410 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_003177_090 Hb_003177_090 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_006717_010 Hb_006717_010 Hb_001195_250--Hb_006717_010 Hb_000251_050 Hb_000251_050 Hb_001195_250--Hb_000251_050 Hb_001689_030 Hb_001689_030 Hb_000103_410--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_000103_410--Hb_002344_080 Hb_000103_410--Hb_003177_090 Hb_025045_010 Hb_025045_010 Hb_000103_410--Hb_025045_010 Hb_002809_120 Hb_002809_120 Hb_000103_410--Hb_002809_120 Hb_143871_010 Hb_143871_010 Hb_000753_150--Hb_143871_010 Hb_031862_120 Hb_031862_120 Hb_000753_150--Hb_031862_120 Hb_000237_160 Hb_000237_160 Hb_000753_150--Hb_000237_160 Hb_000237_170 Hb_000237_170 Hb_000753_150--Hb_000237_170 Hb_000326_080 Hb_000326_080 Hb_000753_150--Hb_000326_080 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_003177_090--Hb_001689_030 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_001269_520--Hb_000251_050 Hb_002110_090 Hb_002110_090 Hb_001269_520--Hb_002110_090 Hb_000417_020 Hb_000417_020 Hb_001269_520--Hb_000417_020 Hb_001538_020 Hb_001538_020 Hb_001269_520--Hb_001538_020 Hb_000270_710 Hb_000270_710 Hb_001269_520--Hb_000270_710 Hb_000567_240 Hb_000567_240 Hb_006717_010--Hb_000567_240 Hb_006717_010--Hb_000103_410 Hb_002006_060 Hb_002006_060 Hb_006717_010--Hb_002006_060 Hb_000589_420 Hb_000589_420 Hb_006717_010--Hb_000589_420 Hb_001948_090 Hb_001948_090 Hb_006717_010--Hb_001948_090 Hb_000251_050--Hb_002110_090 Hb_049293_010 Hb_049293_010 Hb_000251_050--Hb_049293_010 Hb_002099_060 Hb_002099_060 Hb_000251_050--Hb_002099_060 Hb_000251_050--Hb_000418_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4757 21.731 13.5697 22.0442 1.87555 2.07838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.258544 0.397234 0.278669 7.7713 36.498

CAGE analysis