Hb_000589_420

Information

Type -
Description -
Location Contig589: 367239-371163
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05910g
description POPTRDRAFT_803263; fringe-related family protein
nr
ID XP_012088684.1
description PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HMK9
description Fringe-related family protein OS=Populus trichocarpa GN=POPTR_0008s05910g PE=4 SV=1
Gene Ontology
ID GO:0016740
description beta- -n-acetylglucosaminyltransferase lunatic isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50111: 367216-371608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_420 0.0 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
2 Hb_000556_070 0.1217416807 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
3 Hb_167775_010 0.1322473316 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000567_240 0.1373550524 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
5 Hb_006717_010 0.1467462109 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
6 Hb_000321_120 0.1476198991 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
7 Hb_003912_080 0.1577402397 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
8 Hb_001195_250 0.1618948417 - - lrr receptor protein kinase, putative [Ricinus communis]
9 Hb_000103_410 0.1653000894 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
10 Hb_000574_320 0.1663212043 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
11 Hb_002909_100 0.169117143 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
12 Hb_001948_090 0.1696443518 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
13 Hb_000035_060 0.1704038502 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
14 Hb_006422_020 0.1712220271 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
15 Hb_000042_060 0.1733506586 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
16 Hb_000753_120 0.1746151014 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_000340_360 0.1766880824 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
18 Hb_006911_020 0.1772121858 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
19 Hb_002006_060 0.1787149996 - - PREDICTED: oleosin 1-like [Jatropha curcas]
20 Hb_001141_060 0.1789663889 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_420 Hb_000589_420 Hb_000556_070 Hb_000556_070 Hb_000589_420--Hb_000556_070 Hb_167775_010 Hb_167775_010 Hb_000589_420--Hb_167775_010 Hb_000567_240 Hb_000567_240 Hb_000589_420--Hb_000567_240 Hb_006717_010 Hb_006717_010 Hb_000589_420--Hb_006717_010 Hb_000321_120 Hb_000321_120 Hb_000589_420--Hb_000321_120 Hb_003912_080 Hb_003912_080 Hb_000589_420--Hb_003912_080 Hb_000035_060 Hb_000035_060 Hb_000556_070--Hb_000035_060 Hb_004678_010 Hb_004678_010 Hb_000556_070--Hb_004678_010 Hb_000574_320 Hb_000574_320 Hb_000556_070--Hb_000574_320 Hb_000069_500 Hb_000069_500 Hb_000556_070--Hb_000069_500 Hb_001141_060 Hb_001141_060 Hb_000556_070--Hb_001141_060 Hb_029748_020 Hb_029748_020 Hb_167775_010--Hb_029748_020 Hb_167775_010--Hb_003912_080 Hb_001195_250 Hb_001195_250 Hb_167775_010--Hb_001195_250 Hb_167775_010--Hb_000321_120 Hb_002909_100 Hb_002909_100 Hb_167775_010--Hb_002909_100 Hb_000567_240--Hb_006717_010 Hb_004013_020 Hb_004013_020 Hb_000567_240--Hb_004013_020 Hb_000307_010 Hb_000307_010 Hb_000567_240--Hb_000307_010 Hb_000065_090 Hb_000065_090 Hb_000567_240--Hb_000065_090 Hb_000753_120 Hb_000753_120 Hb_000567_240--Hb_000753_120 Hb_006717_010--Hb_001195_250 Hb_000103_410 Hb_000103_410 Hb_006717_010--Hb_000103_410 Hb_002006_060 Hb_002006_060 Hb_006717_010--Hb_002006_060 Hb_001948_090 Hb_001948_090 Hb_006717_010--Hb_001948_090 Hb_000321_120--Hb_029748_020 Hb_000340_360 Hb_000340_360 Hb_000321_120--Hb_000340_360 Hb_000221_180 Hb_000221_180 Hb_000321_120--Hb_000221_180 Hb_000175_270 Hb_000175_270 Hb_000321_120--Hb_000175_270 Hb_013399_090 Hb_013399_090 Hb_000321_120--Hb_013399_090 Hb_001269_050 Hb_001269_050 Hb_000321_120--Hb_001269_050 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_003912_080--Hb_004678_010 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86327 14.5822 8.36922 9.42232 2.33367 2.68502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143178 0.112646 1.78271 2.0663 17.3973

CAGE analysis