Hb_000103_410

Information

Type -
Description -
Location Contig103: 346727-349741
Sequence    

Annotation

kegg
ID cit:102629519
description putative calcium-transporting ATPase 13, plasma membrane-type-like
nr
ID XP_012069931.1
description PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
swissprot
ID Q9LIK7
description Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=3 SV=1
trembl
ID A0A067L855
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_02242 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01240: 346619-346937 , PASA_asmbl_01241: 347477-347677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_410 0.0 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
2 Hb_001689_030 0.1010575615 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
3 Hb_001195_250 0.1128014795 - - lrr receptor protein kinase, putative [Ricinus communis]
4 Hb_002344_080 0.1212119613 - - PREDICTED: protein YLS2-like [Populus euphratica]
5 Hb_003177_090 0.1288637565 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
6 Hb_025045_010 0.1294846773 - - catalytic, putative [Ricinus communis]
7 Hb_002809_120 0.1331534986 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
8 Hb_000816_160 0.1346638859 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
9 Hb_000035_060 0.1350823134 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
10 Hb_006717_010 0.1425834131 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
11 Hb_001195_230 0.1452443317 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
12 Hb_002838_010 0.1456111549 - - AGPase large subunit protein [Hevea brasiliensis]
13 Hb_001948_090 0.1469269404 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
14 Hb_001486_100 0.1469959854 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_004605_020 0.1471162736 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
16 Hb_000753_150 0.1472274852 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
17 Hb_001147_030 0.1495417544 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
18 Hb_000096_110 0.1512709269 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
19 Hb_004907_070 0.1513297409 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
20 Hb_000438_020 0.1526087711 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000103_410 Hb_000103_410 Hb_001689_030 Hb_001689_030 Hb_000103_410--Hb_001689_030 Hb_001195_250 Hb_001195_250 Hb_000103_410--Hb_001195_250 Hb_002344_080 Hb_002344_080 Hb_000103_410--Hb_002344_080 Hb_003177_090 Hb_003177_090 Hb_000103_410--Hb_003177_090 Hb_025045_010 Hb_025045_010 Hb_000103_410--Hb_025045_010 Hb_002809_120 Hb_002809_120 Hb_000103_410--Hb_002809_120 Hb_001689_030--Hb_002344_080 Hb_001689_030--Hb_003177_090 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_000816_160 Hb_000816_160 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_006717_010 Hb_006717_010 Hb_001195_250--Hb_006717_010 Hb_000251_050 Hb_000251_050 Hb_001195_250--Hb_000251_050 Hb_002344_080--Hb_000816_160 Hb_002344_080--Hb_003177_090 Hb_000181_230 Hb_000181_230 Hb_002344_080--Hb_000181_230 Hb_143629_200 Hb_143629_200 Hb_002344_080--Hb_143629_200 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_003177_090--Hb_143629_200 Hb_001821_060 Hb_001821_060 Hb_025045_010--Hb_001821_060 Hb_013968_010 Hb_013968_010 Hb_025045_010--Hb_013968_010 Hb_002026_030 Hb_002026_030 Hb_025045_010--Hb_002026_030 Hb_003912_080 Hb_003912_080 Hb_025045_010--Hb_003912_080 Hb_007765_130 Hb_007765_130 Hb_025045_010--Hb_007765_130 Hb_025045_010--Hb_002888_040 Hb_001357_060 Hb_001357_060 Hb_002809_120--Hb_001357_060 Hb_000260_480 Hb_000260_480 Hb_002809_120--Hb_000260_480 Hb_004907_070 Hb_004907_070 Hb_002809_120--Hb_004907_070 Hb_000500_230 Hb_000500_230 Hb_002809_120--Hb_000500_230 Hb_007747_100 Hb_007747_100 Hb_002809_120--Hb_007747_100 Hb_005271_180 Hb_005271_180 Hb_002809_120--Hb_005271_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0682076 0.688023 0.438081 0.460571 0.0680356 0.0232656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0144394 0 0.0217375 0.229838 0.800097

CAGE analysis