Hb_000181_230

Information

Type -
Description -
Location Contig181: 188260-189907
Sequence    

Annotation

kegg
ID rcu:RCOM_0590710
description copper ion binding protein, putative
nr
ID XP_002528251.1
description copper ion binding protein, putative [Ricinus communis]
swissprot
ID Q9T076
description Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1
trembl
ID B9SQI2
description Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_0590710 PE=4 SV=1
Gene Ontology
ID GO:0009055
description early nodulin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17518: 188306-189511 , PASA_asmbl_17519: 189516-189642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_230 0.0 - - copper ion binding protein, putative [Ricinus communis]
2 Hb_005724_040 0.0873595282 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
3 Hb_007483_120 0.1029870336 - - 60S ribosomal protein L32A [Hevea brasiliensis]
4 Hb_002740_100 0.1063231899 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_002099_060 0.1131586378 - - Protein AFR, putative [Ricinus communis]
6 Hb_002344_080 0.1138599056 - - PREDICTED: protein YLS2-like [Populus euphratica]
7 Hb_002685_160 0.1235079779 - - leucine-rich repeat protein, putative [Ricinus communis]
8 Hb_002110_090 0.1290075382 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
9 Hb_000107_550 0.132339205 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
10 Hb_002849_180 0.1363547048 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_000326_080 0.1377884638 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_029748_020 0.1423464433 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004864_020 0.1430371832 - - Polyprotein, putative [Solanum demissum]
14 Hb_006185_040 0.1434867708 - - PREDICTED: verprolin [Jatropha curcas]
15 Hb_000438_020 0.1438984811 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
16 Hb_012308_050 0.1465252461 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
17 Hb_002685_220 0.1467603077 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
18 Hb_003177_090 0.149218092 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
19 Hb_002097_080 0.149729921 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
20 Hb_001689_030 0.1501963232 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_230 Hb_000181_230 Hb_005724_040 Hb_005724_040 Hb_000181_230--Hb_005724_040 Hb_007483_120 Hb_007483_120 Hb_000181_230--Hb_007483_120 Hb_002740_100 Hb_002740_100 Hb_000181_230--Hb_002740_100 Hb_002099_060 Hb_002099_060 Hb_000181_230--Hb_002099_060 Hb_002344_080 Hb_002344_080 Hb_000181_230--Hb_002344_080 Hb_002685_160 Hb_002685_160 Hb_000181_230--Hb_002685_160 Hb_005724_040--Hb_002740_100 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_005724_040--Hb_007483_120 Hb_005724_040--Hb_002099_060 Hb_005724_040--Hb_002685_160 Hb_012308_050 Hb_012308_050 Hb_007483_120--Hb_012308_050 Hb_002510_100 Hb_002510_100 Hb_007483_120--Hb_002510_100 Hb_007483_120--Hb_002685_160 Hb_000685_020 Hb_000685_020 Hb_007483_120--Hb_000685_020 Hb_001486_100 Hb_001486_100 Hb_002740_100--Hb_001486_100 Hb_006414_010 Hb_006414_010 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_000326_080 Hb_000326_080 Hb_002740_100--Hb_000326_080 Hb_000438_020 Hb_000438_020 Hb_002099_060--Hb_000438_020 Hb_029748_020 Hb_029748_020 Hb_002099_060--Hb_029748_020 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000418_150 Hb_000418_150 Hb_002099_060--Hb_000418_150 Hb_001689_030 Hb_001689_030 Hb_002344_080--Hb_001689_030 Hb_000816_160 Hb_000816_160 Hb_002344_080--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_002344_080--Hb_003177_090 Hb_143629_200 Hb_143629_200 Hb_002344_080--Hb_143629_200 Hb_000103_410 Hb_000103_410 Hb_002344_080--Hb_000103_410 Hb_002685_160--Hb_000685_020 Hb_000230_360 Hb_000230_360 Hb_002685_160--Hb_000230_360 Hb_152980_020 Hb_152980_020 Hb_002685_160--Hb_152980_020 Hb_003656_090 Hb_003656_090 Hb_002685_160--Hb_003656_090 Hb_002097_080 Hb_002097_080 Hb_002685_160--Hb_002097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43023 26.6239 25.5824 44.6322 4.55567 5.35352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328879 0.117611 0.0442561 18.3557 38.6894

CAGE analysis