Hb_004864_020

Information

Type -
Description -
Location Contig4864: 32971-33347
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID AAT40504.2
description Polyprotein, putative [Solanum demissum]
swissprot
ID -
description -
trembl
ID Q6L4B3
description Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2
Gene Ontology
ID GO:0005488
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004864_020 0.0 - - Polyprotein, putative [Solanum demissum]
2 Hb_000714_120 0.1074692542 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
3 Hb_000418_150 0.1085691089 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_002099_060 0.1107959129 - - Protein AFR, putative [Ricinus communis]
5 Hb_029748_020 0.1148430099 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000139_510 0.1278562212 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
7 Hb_000438_020 0.12954217 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
8 Hb_002888_040 0.1368531944 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
9 Hb_000181_230 0.1430371832 - - copper ion binding protein, putative [Ricinus communis]
10 Hb_002833_020 0.1443057926 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_005724_040 0.1463198543 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
12 Hb_003177_090 0.1489435898 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
13 Hb_000770_010 0.152576843 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_000757_020 0.1543178878 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
15 Hb_000936_090 0.1553657761 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
16 Hb_002110_090 0.1556882822 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
17 Hb_000261_320 0.1570465717 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_000100_210 0.1576430454 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
19 Hb_001522_040 0.1604880458 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_002344_080 0.1612955835 - - PREDICTED: protein YLS2-like [Populus euphratica]

Gene co-expression network

sample Hb_004864_020 Hb_004864_020 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_000418_150 Hb_000418_150 Hb_004864_020--Hb_000418_150 Hb_002099_060 Hb_002099_060 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_000757_020 Hb_000757_020 Hb_000714_120--Hb_000757_020 Hb_003177_090 Hb_003177_090 Hb_000714_120--Hb_003177_090 Hb_000714_120--Hb_002099_060 Hb_002110_090 Hb_002110_090 Hb_000714_120--Hb_002110_090 Hb_000714_120--Hb_000418_150 Hb_000418_150--Hb_000438_020 Hb_000418_150--Hb_000757_020 Hb_000418_150--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120 Hb_000418_150--Hb_002099_060 Hb_002099_060--Hb_000438_020 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_000100_210 Hb_000100_210 Hb_029748_020--Hb_000100_210 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_001522_040 Hb_001522_040 Hb_029748_020--Hb_001522_040 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_153257_010 Hb_153257_010 Hb_000139_510--Hb_153257_010 Hb_002833_020 Hb_002833_020 Hb_000139_510--Hb_002833_020 Hb_000574_370 Hb_000574_370 Hb_000139_510--Hb_000574_370 Hb_003092_050 Hb_003092_050 Hb_000139_510--Hb_003092_050 Hb_000085_380 Hb_000085_380 Hb_000139_510--Hb_000085_380 Hb_000438_020--Hb_003177_090 Hb_001307_200 Hb_001307_200 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60819 13.1212 10.1414 14.3429 0.581102 4.43641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28033 0.220376 0 12.9488 17.0438

CAGE analysis