Hb_001496_120

Information

Type -
Description -
Location Contig1496: 106963-108281
Sequence    

Annotation

kegg
ID bvg:104907627
description uncharacterized LOC104907627
nr
ID XP_010694888.1
description PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M1BPI1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019390 PE=4 SV=1
Gene Ontology
ID GO:0003824
description yth domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_120 0.0 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
2 Hb_000221_180 0.1130370727 - - VQ motif-containing family protein [Populus trichocarpa]
3 Hb_000418_150 0.1162758704 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_073973_020 0.1221351206 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
5 Hb_001307_200 0.1258746984 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
6 Hb_000438_020 0.1292948104 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
7 Hb_002888_060 0.1328144602 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_000139_510 0.1344208438 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
9 Hb_012033_010 0.1360904669 - - PREDICTED: histone H1.2-like [Jatropha curcas]
10 Hb_001476_090 0.1401187819 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
11 Hb_000574_370 0.1408276675 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_001821_060 0.1408845033 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
13 Hb_002888_040 0.1418368838 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
14 Hb_000757_020 0.1427106157 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
15 Hb_000175_270 0.1477636767 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
16 Hb_000261_320 0.148577715 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_049293_010 0.1516329751 - - kinase, putative [Ricinus communis]
18 Hb_001484_090 0.1522007134 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_029748_020 0.1522498563 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000321_120 0.1536389017 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]

Gene co-expression network

sample Hb_001496_120 Hb_001496_120 Hb_000221_180 Hb_000221_180 Hb_001496_120--Hb_000221_180 Hb_000418_150 Hb_000418_150 Hb_001496_120--Hb_000418_150 Hb_073973_020 Hb_073973_020 Hb_001496_120--Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_002888_060 Hb_002888_060 Hb_001496_120--Hb_002888_060 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_000221_180--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000221_180--Hb_000175_270 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_000418_150--Hb_000438_020 Hb_000757_020 Hb_000757_020 Hb_000418_150--Hb_000757_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_003177_090 Hb_003177_090 Hb_000418_150--Hb_003177_090 Hb_002099_060 Hb_002099_060 Hb_000418_150--Hb_002099_060 Hb_073973_020--Hb_001307_200 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001307_200--Hb_001268_300 Hb_001307_200--Hb_002888_040 Hb_001307_200--Hb_000417_410 Hb_000438_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_000438_020--Hb_029748_020 Hb_000438_020--Hb_003177_090 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030 Hb_001677_230 Hb_001677_230 Hb_002888_060--Hb_001677_230 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_000191_100 Hb_000191_100 Hb_002888_060--Hb_000191_100 Hb_001963_110 Hb_001963_110 Hb_002888_060--Hb_001963_110 Hb_002888_060--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.483066 2.77128 1.7748 1.65241 0.480546 0.60861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179795 0.0471296 0.171836 3.15743 4.2935

CAGE analysis