Hb_002888_060

Information

Type -
Description -
Location Contig2888: 43228-66824
Sequence    

Annotation

kegg
ID rcu:RCOM_0742540
description hypothetical protein
nr
ID XP_012077089.1
description PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
swissprot
ID Q8W5R2
description Phospholipase SGR2 OS=Arabidopsis thaliana GN=SGR2 PE=1 SV=1
trembl
ID A0A067LMH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17221 PE=4 SV=1
Gene Ontology
ID GO:0005773
description shoot gravitropism 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30142: 52495-65978 , PASA_asmbl_30143: 66442-67181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_060 0.0 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
2 Hb_001677_230 0.1113938965 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_001141_040 0.120241491 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
4 Hb_000191_100 0.1221587953 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001496_120 0.1328144602 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_001963_110 0.133828026 - - -
7 Hb_001268_300 0.137542101 - - conserved hypothetical protein [Ricinus communis]
8 Hb_082683_010 0.1378714532 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_000365_220 0.143183948 - - protein phosphatase-1, putative [Ricinus communis]
10 Hb_000442_170 0.1443828295 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_002888_040 0.1502189304 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
12 Hb_011853_010 0.1516573751 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
13 Hb_003517_100 0.1517230671 transcription factor TF Family: GRAS -
14 Hb_073973_020 0.1540510681 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
15 Hb_001476_090 0.154875579 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
16 Hb_000594_130 0.1549235356 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001307_200 0.155769752 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
18 Hb_031862_200 0.1572038688 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
19 Hb_000264_340 0.1582689882 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
20 Hb_002811_020 0.1597259905 - - Cysteine synthase [Morus notabilis]

Gene co-expression network

sample Hb_002888_060 Hb_002888_060 Hb_001677_230 Hb_001677_230 Hb_002888_060--Hb_001677_230 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_000191_100 Hb_000191_100 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_001963_110 Hb_001963_110 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300 Hb_001619_010 Hb_001619_010 Hb_001677_230--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_001677_230--Hb_082683_010 Hb_001677_230--Hb_001963_110 Hb_006096_020 Hb_006096_020 Hb_001677_230--Hb_006096_020 Hb_033594_100 Hb_033594_100 Hb_001677_230--Hb_033594_100 Hb_001141_040--Hb_000191_100 Hb_005568_050 Hb_005568_050 Hb_001141_040--Hb_005568_050 Hb_002811_020 Hb_002811_020 Hb_001141_040--Hb_002811_020 Hb_000442_170 Hb_000442_170 Hb_001141_040--Hb_000442_170 Hb_000776_020 Hb_000776_020 Hb_001141_040--Hb_000776_020 Hb_016637_020 Hb_016637_020 Hb_000191_100--Hb_016637_020 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_029866_110 Hb_029866_110 Hb_000191_100--Hb_029866_110 Hb_007205_020 Hb_007205_020 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050 Hb_000221_180 Hb_000221_180 Hb_001496_120--Hb_000221_180 Hb_000418_150 Hb_000418_150 Hb_001496_120--Hb_000418_150 Hb_073973_020 Hb_073973_020 Hb_001496_120--Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_001963_110--Hb_000442_170 Hb_002308_060 Hb_002308_060 Hb_001963_110--Hb_002308_060 Hb_003992_220 Hb_003992_220 Hb_001963_110--Hb_003992_220 Hb_001963_110--Hb_000776_020 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_001268_300--Hb_082683_010 Hb_001268_300--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.423039 7.61153 4.82813 3.98171 0.414227 0.735979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197889 0.194625 0.810063 11.5234 13.5388

CAGE analysis