Hb_006096_020

Information

Type -
Description -
Location Contig6096: 29434-30638
Sequence    

Annotation

kegg
ID dosa:Os06t0343500-01
description Os06g0343500; Hypothetical protein.
nr
ID NP_001057576.1
description Os06g0343500 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q0DCD3
description Os06g0343500 protein OS=Oryza sativa subsp. japonica GN=Os06g0343500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50893: 29235-30862
cDNA
(Sanger)
(ID:Location)		 047_F06r.ab1: 29241-29988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006096_020 0.0 - - Os06g0343500 [Oryza sativa Japonica Group]
2 Hb_000816_020 0.1279725629 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
3 Hb_001677_230 0.1380631086 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
4 Hb_012023_010 0.1489942151 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001619_010 0.1520042462 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
6 Hb_082683_010 0.1630291314 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_000059_080 0.169531216 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
8 Hb_010812_140 0.1797184289 - - protein binding protein, putative [Ricinus communis]
9 Hb_009230_020 0.1811687034 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_000661_230 0.1819123645 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
11 Hb_002888_060 0.1843335087 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
12 Hb_005016_120 0.1850162754 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
13 Hb_003212_010 0.1879896036 - - sucrose transporter 4 [Hevea brasiliensis]
14 Hb_008692_010 0.1934602014 - - putative polyol transported protein 2 [Hevea brasiliensis]
15 Hb_112203_010 0.1935046782 - - -
16 Hb_001519_240 0.1951719595 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_002217_200 0.1963354915 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
18 Hb_002122_050 0.1970972763 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_132515_010 0.198764119 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_003517_010 0.202584904 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006096_020 Hb_006096_020 Hb_000816_020 Hb_000816_020 Hb_006096_020--Hb_000816_020 Hb_001677_230 Hb_001677_230 Hb_006096_020--Hb_001677_230 Hb_012023_010 Hb_012023_010 Hb_006096_020--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_006096_020--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_006096_020--Hb_082683_010 Hb_000059_080 Hb_000059_080 Hb_006096_020--Hb_000059_080 Hb_000816_020--Hb_082683_010 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_001677_230--Hb_001619_010 Hb_001677_230--Hb_082683_010 Hb_001963_110 Hb_001963_110 Hb_001677_230--Hb_001963_110 Hb_001677_230--Hb_033594_100 Hb_010812_140 Hb_010812_140 Hb_012023_010--Hb_010812_140 Hb_012023_010--Hb_001619_010 Hb_012023_010--Hb_000059_080 Hb_000600_080 Hb_000600_080 Hb_012023_010--Hb_000600_080 Hb_012023_010--Hb_001677_230 Hb_001619_010--Hb_010812_140 Hb_005016_120 Hb_005016_120 Hb_001619_010--Hb_005016_120 Hb_001619_010--Hb_001963_110 Hb_082683_010--Hb_002420_010 Hb_001268_300 Hb_001268_300 Hb_082683_010--Hb_001268_300 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_003212_010 Hb_003212_010 Hb_000059_080--Hb_003212_010 Hb_007320_020 Hb_007320_020 Hb_000059_080--Hb_007320_020 Hb_003767_010 Hb_003767_010 Hb_000059_080--Hb_003767_010 Hb_000264_340 Hb_000264_340 Hb_000059_080--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_000059_080--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000059_080--Hb_109489_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83918 64.2938 12.4707 18.581 2.89039 6.25693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01751 5.05052 3.85238 147.168 101.472

CAGE analysis