Hb_000811_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig811: 3390-4882
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06470g
description hypothetical protein
nr
ID XP_012092999.1
description PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
swissprot
ID Q9SUE3
description Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2
trembl
ID A0A067JBK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05882 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000811_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
2 Hb_006594_060 0.1010799344 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
3 Hb_082683_010 0.1317191687 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_002420_010 0.1478065325 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_000816_020 0.1562877077 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
6 Hb_000527_140 0.1593226449 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
7 Hb_000793_040 0.159417452 - - PREDICTED: transcription factor LHW [Jatropha curcas]
8 Hb_000317_220 0.169275682 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005181_180 0.1708662404 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000155_040 0.1727436328 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
11 Hb_002026_080 0.1741466547 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
12 Hb_000963_200 0.1745652201 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_000034_030 0.1831556764 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_000046_610 0.1838230321 - - PREDICTED: putative cullin-like protein 2 isoform X3 [Populus euphratica]
15 Hb_000834_040 0.1841390903 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
16 Hb_101449_010 0.1846123136 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
17 Hb_013749_060 0.1864681599 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
18 Hb_020378_010 0.1866071427 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
19 Hb_033594_100 0.187159983 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_007919_040 0.1874127236 - - PREDICTED: protein LYK5 [Jatropha curcas]

Gene co-expression network

sample Hb_000811_010 Hb_000811_010 Hb_006594_060 Hb_006594_060 Hb_000811_010--Hb_006594_060 Hb_082683_010 Hb_082683_010 Hb_000811_010--Hb_082683_010 Hb_002420_010 Hb_002420_010 Hb_000811_010--Hb_002420_010 Hb_000816_020 Hb_000816_020 Hb_000811_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_000811_010--Hb_000527_140 Hb_000793_040 Hb_000793_040 Hb_000811_010--Hb_000793_040 Hb_022501_020 Hb_022501_020 Hb_006594_060--Hb_022501_020 Hb_006594_060--Hb_000527_140 Hb_000963_200 Hb_000963_200 Hb_006594_060--Hb_000963_200 Hb_006594_060--Hb_082683_010 Hb_006316_030 Hb_006316_030 Hb_006594_060--Hb_006316_030 Hb_082683_010--Hb_002420_010 Hb_001268_300 Hb_001268_300 Hb_082683_010--Hb_001268_300 Hb_082683_010--Hb_000816_020 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230 Hb_002420_010--Hb_002003_040 Hb_000215_250 Hb_000215_250 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_002420_010--Hb_000793_040 Hb_006096_020 Hb_006096_020 Hb_000816_020--Hb_006096_020 Hb_000816_020--Hb_001677_230 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_064985_010 Hb_064985_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_042202_020 Hb_042202_020 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0417887 1.94381 0.487748 1.73034 0.0195821 0.159201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.19127 0.413709 0.0694335 3.67126 1.62103

CAGE analysis