Hb_005288_210

Information

Type -
Description -
Location Contig5288: 128115-136047
Sequence    

Annotation

kegg
ID vvi:104881327
description uncharacterized LOC104881327
nr
ID CAN67199.1
description hypothetical protein VITISV_017217 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AVN4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017217 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47210: 133214-134760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_210 0.0 - - hypothetical protein VITISV_017217 [Vitis vinifera]
2 Hb_000793_040 0.1193891958 - - PREDICTED: transcription factor LHW [Jatropha curcas]
3 Hb_000438_020 0.1306797427 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
4 Hb_002420_010 0.1309314903 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_002671_060 0.1346808935 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
6 Hb_003226_030 0.1357141016 - - sucrose synthase 5 [Hevea brasiliensis]
7 Hb_002833_020 0.1394662079 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_002003_040 0.1410917393 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_002099_060 0.1424331803 - - Protein AFR, putative [Ricinus communis]
10 Hb_001832_210 0.1434413138 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
11 Hb_042202_020 0.1483851695 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
12 Hb_001071_060 0.1517154267 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
13 Hb_000483_130 0.152997152 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
14 Hb_001486_060 0.1533283188 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
15 Hb_003092_050 0.1546933019 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
16 Hb_000197_230 0.1550196191 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_000215_250 0.1550650492 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
18 Hb_000085_380 0.1566834637 - - conserved hypothetical protein [Ricinus communis]
19 Hb_086336_010 0.1571533564 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
20 Hb_000997_340 0.1574352903 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005288_210 Hb_005288_210 Hb_000793_040 Hb_000793_040 Hb_005288_210--Hb_000793_040 Hb_000438_020 Hb_000438_020 Hb_005288_210--Hb_000438_020 Hb_002420_010 Hb_002420_010 Hb_005288_210--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_005288_210--Hb_002671_060 Hb_003226_030 Hb_003226_030 Hb_005288_210--Hb_003226_030 Hb_002833_020 Hb_002833_020 Hb_005288_210--Hb_002833_020 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_000793_040--Hb_002420_010 Hb_002099_060 Hb_002099_060 Hb_000438_020--Hb_002099_060 Hb_000418_150 Hb_000418_150 Hb_000438_020--Hb_000418_150 Hb_029748_020 Hb_029748_020 Hb_000438_020--Hb_029748_020 Hb_003177_090 Hb_003177_090 Hb_000438_020--Hb_003177_090 Hb_001307_200 Hb_001307_200 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030 Hb_002003_040 Hb_002003_040 Hb_002420_010--Hb_002003_040 Hb_082683_010 Hb_082683_010 Hb_002420_010--Hb_082683_010 Hb_000215_250 Hb_000215_250 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_002671_060--Hb_002003_040 Hb_006934_020 Hb_006934_020 Hb_002671_060--Hb_006934_020 Hb_073808_010 Hb_073808_010 Hb_002671_060--Hb_073808_010 Hb_002671_060--Hb_003226_030 Hb_042202_020 Hb_042202_020 Hb_002671_060--Hb_042202_020 Hb_000085_380 Hb_000085_380 Hb_002671_060--Hb_000085_380 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_002000_130 Hb_002000_130 Hb_003226_030--Hb_002000_130 Hb_003226_030--Hb_007943_020 Hb_001143_140 Hb_001143_140 Hb_003226_030--Hb_001143_140 Hb_005357_020 Hb_005357_020 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_001008_110 Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_002833_020--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105089 1.7978 0.597457 2.06998 0.233534 0.227875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0655022 0.072165 0 1.90034 1.54229

CAGE analysis